C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167944 Pcdh19-201 ENSMUSG00000051323 10090 - X:133582863-133688993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167944
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167944 1.136±0.51 0.889±0.67 0.413±0.07 3.591±1.32 0.955±0.56 0.209±0.03 0.516±0.18 0.205±0.06 0.028±0.02 0.399±0.19 0.267±0.06 0.281±0.19 0.239±0.08 0.018±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YN CIL_0000YN_0003 CGP X:133582863-133865577

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255531 PCDH19-001 protein_coding Homo_sapiens 0 6056
ENST00000373034 PCDH19-002 protein_coding Homo_sapiens 0 3524
ENST00000420881 PCDH19-004 protein_coding Homo_sapiens 0 6065
ENST00000464981 PCDH19-003 nonsense_mediated_decay Homo_sapiens 0 355

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