C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neuron navigator 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052512 Nav2 10090 + 7:48908716-49610090 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064383 Nav2-005 49364721-49454642 retained_intron
  ENSMUST00000064395 Nav2-201 49246189-49610087 protein_coding
  ENSMUST00000183531 Nav2-007 48959073-48967836 retained_intron
  ENSMUST00000183659 Nav2-006 48959097-49606821 protein_coding
  ENSMUST00000183715 Nav2-015 49587417-49590053 retained_intron
  ENSMUST00000184102 Nav2-013 49575140-49576605 retained_intron
  ENSMUST00000184109 Nav2-012 49548192-49556996 protein_coding
  ENSMUST00000184124 Nav2-003 49246845-49494000 nonsense_mediated_decay
  ENSMUST00000184155 Nav2-008 49450760-49464580 processed_transcript
  ENSMUST00000184336 Nav2-016 48908716-48963824 processed_transcript
  ENSMUST00000184462 Nav2-010 49304254-49305917 retained_intron
  ENSMUST00000184471 Nav2-014 49585244-49586827 retained_intron
  ENSMUST00000184544 Nav2-011 49553892-49556730 retained_intron
  ENSMUST00000184809 Nav2-002 49246189-49409643 retained_intron
  ENSMUST00000184928 Nav2-004 49304138-49411406 retained_intron
  ENSMUST00000184945 Nav2-009 49246844-49610090 protein_coding
  ENSMUST00000184955 Nav2-001 49304252-49437789 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064395ENSMUST00000183659ENSMUST00000184945
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064395 0.454±0.51 0.485±0.00 0.271±0.00 1.366±0.71 0.380±0.18 0.638±0.00 N/A N/A N/A 1.807±0.28 N/A 1.540±0.59 N/A N/A
ENSMUST00000183659 N/A 0.353±0.16 N/A 3.347±0.00 0.250±0.00 0.434±0.00 N/A N/A 1.041±0.00 2.693±0.00 N/A N/A N/A 0.999±0.00
ENSMUST00000184945 1.678±0.00 0.174±0.00 1.474±0.06 1.681±0.23 0.258±0.01 0.797±0.44 1.819±1.50 4.505±0.50 2.023±1.63 6.142±0.98 0.855±0.39 2.398±1.55 1.015±0.54 2.707±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RI CIL_0008RI_0002 VISTA 7:48524185-49126415
CIL_0008YB CIL_0008YB_0002 VISTA 7:48559718-49163012
CIL_0004AV CIL_0004AV_0003 CGP 7:48866429-49610090
CIL_0004AW CIL_0004AW_0003 CGP 7:48908716-49636849

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003025 IMP regulation of systemic arterial blood pressure by baroreceptor feedback
GO:0005524 IEA ATP binding
GO:0005614 IDA interstitial matrix
GO:0005634 IEA nucleus
GO:0007399 IEA nervous system development
GO:0007605 IMP sensory perception of sound
GO:0007608 IMP sensory perception of smell
GO:0007626 IMP locomotory behavior
GO:0008201 IDA heparin binding
GO:0021554 IMP optic nerve development
GO:0021563 IMP glossopharyngeal nerve development
GO:0021564 IMP vagus nerve development
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001879 nav2b neuron navigator 2b protein_coding Danio_rerio
ENSDARG00000073688 NAV2 (2 of 2) neuron navigator 2 protein_coding Danio_rerio
ENSG00000166833 NAV2 neuron navigator 2 protein_coding Homo_sapiens

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