C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuron navigator 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184945 Nav2-009 ENSMUSG00000052512 10090 + 7:49246844-49610090 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000184945
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000184945 1.678±0.00 0.174±0.00 1.474±0.06 1.681±0.23 0.258±0.01 0.797±0.44 1.819±1.50 4.505±0.50 2.023±1.63 6.142±0.98 0.855±0.39 2.398±1.55 1.015±0.54 2.707±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RI CIL_0008RI_0002 VISTA 7:48524185-49126415
CIL_0008YB CIL_0008YB_0002 VISTA 7:48559718-49163012
CIL_0004AV CIL_0004AV_0003 CGP 7:48866429-49610090
CIL_0004AW CIL_0004AW_0003 CGP 7:48908716-49636849

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003025 IMP regulation of systemic arterial blood pressure by baroreceptor feedback
GO:0005524 IEA ATP binding
GO:0005614 IDA interstitial matrix
GO:0005634 IEA nucleus
GO:0007399 IEA nervous system development
GO:0007605 IMP sensory perception of sound
GO:0007608 IMP sensory perception of smell
GO:0007626 IMP locomotory behavior
GO:0008201 IDA heparin binding
GO:0021554 IMP optic nerve development
GO:0021563 IMP glossopharyngeal nerve development
GO:0021564 IMP vagus nerve development
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113332 NAV2 (2 of 2)-201 protein_coding Danio_rerio 0 1129
ENSDART00000143666 nav2b-001 protein_coding Danio_rerio 0 562
ENST00000349880 NAV2-003 protein_coding Homo_sapiens 0 8488
ENST00000360655 NAV2-008 protein_coding Homo_sapiens 0 8019
ENST00000396085 NAV2-002 protein_coding Homo_sapiens 0 8540
ENST00000396087 NAV2-001 protein_coding Homo_sapiens 0 4359
ENST00000525322 NAV2-006 protein_coding Homo_sapiens 0 1729
ENST00000526675 NAV2-011 processed_transcript Homo_sapiens 0 577
ENST00000527559 NAV2-201 protein_coding Homo_sapiens 0 4359
ENST00000528008 NAV2-014 processed_transcript Homo_sapiens 0 468
ENST00000528923 NAV2-013 retained_intron Homo_sapiens 0 416
ENST00000530408 NAV2-009 protein_coding Homo_sapiens 0 573
ENST00000533746 NAV2-004 retained_intron Homo_sapiens 0 839
ENST00000533917 NAV2-005 protein_coding Homo_sapiens 0 3570
ENST00000534229 NAV2-007 processed_transcript Homo_sapiens 0 610
ENST00000534299 NAV2-010 processed_transcript Homo_sapiens 0 575
ENST00000540292 NAV2-202 protein_coding Homo_sapiens 0 8516

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