C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GLIS family zinc finger 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162022 Glis3-001 ENSMUSG00000052942 10090 - 19:28258851-28680077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162022
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162022 2.485±1.71 0.803±0.14 0.430±0.07 0.377±0.21 0.284±0.21 1.121±0.20 0.039±0.01 6.119±1.47 0.052±0.03 1.183±0.28 0.038±0.02 1.709±0.57 0.517±0.32 0.220±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000F0 CIL_0000F0_0002 CGP 19:27761721-28680077
CIL_0000NI CIL_0000NI_0002 CGP 19:28258851-28913960

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005794 IEA Golgi apparatus
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324333 GLIS3-003 protein_coding Homo_sapiens 0 2451
ENST00000381971 GLIS3-008 protein_coding Homo_sapiens 0 2946
ENST00000461870 GLIS3-019 processed_transcript Homo_sapiens 0 1227
ENST00000462164 GLIS3-017 protein_coding Homo_sapiens 0 455
ENST00000463680 GLIS3-020 retained_intron Homo_sapiens 0 442
ENST00000464391 GLIS3-007 processed_transcript Homo_sapiens 1e-39 167
ENST00000467497 GLIS3-005 retained_intron Homo_sapiens 0 1138
ENST00000477901 GLIS3-010 protein_coding Homo_sapiens 0 950
ENST00000478315 GLIS3-015 protein_coding Homo_sapiens 0 453
ENST00000478844 GLIS3-012 protein_coding Homo_sapiens 0 455
ENST00000481827 GLIS3-013 protein_coding Homo_sapiens 0 813

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