C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000F0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000014550-ENSDARG00000069726 CGP 7955 10:587499-677490
GeneTranscriptPositionBiotype
ENSDARG00000014550 (rfx3)
regulatory factor X, 3 (influences HLA class II expression) 		ENSDART00000041236 (rfx3-201) 587499-628881 protein_coding
ENSDART00000144234 (rfx3-002) 594195-612712 protein_coding
ENSDART00000144882 (rfx3-001) 592536-628881 protein_coding
ENSDARG00000069726 (glis3)
GLIS family zinc finger 3 		ENSDART00000142833 (glis3-001) 631843-677490 protein_coding
CIL_0000F0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040929-ENSMUSG00000052942 CGP 10090 19:27761721-28680077
GeneTranscriptPositionBiotype
ENSMUSG00000040929 (Rfx3)
regulatory factor X, 3 (influences HLA class II expression) 		ENSMUST00000046898 (Rfx3-003) 27766441-28011048 protein_coding
ENSMUST00000165566 (Rfx3-201) 27761721-27982948 protein_coding
ENSMUST00000172498 (Rfx3-006) 27768141-27836846 processed_transcript
ENSMUST00000172907 (Rfx3-004) 27768318-28011045 protein_coding
ENSMUST00000173161 (Rfx3-002) 27805143-28011166 retained_intron
ENSMUST00000173863 (Rfx3-005) 27768455-27900895 nonsense_mediated_decay
ENSMUST00000174420 (Rfx3-007) 27867515-28010790 protein_coding
ENSMUST00000174850 (Rfx3-001) 27768139-28011140 protein_coding
ENSMUSG00000052942 (Glis3)
GLIS family zinc finger 3 		ENSMUST00000065113 (Glis3-003) 28262364-28679666 nonsense_mediated_decay
ENSMUST00000112612 (Glis3-002) 28349573-28680077 protein_coding
ENSMUST00000159178 (Glis3-006) 28531847-28666685 protein_coding
ENSMUST00000159520 (Glis3-008) 28262347-28326006 processed_transcript
ENSMUST00000159639 (Glis3-010) 28263951-28283906 retained_intron
ENSMUST00000160376 (Glis3-004) 28531847-28678690 nonsense_mediated_decay
ENSMUST00000161026 (Glis3-007) 28262973-28540420 retained_intron
ENSMUST00000161328 (Glis3-005) 28531847-28678690 protein_coding
ENSMUST00000162022 (Glis3-001) 28258851-28680077 protein_coding
ENSMUST00000162873 (Glis3-009) 28262426-28300425 processed_transcript
ENSMUSG00000089952 (4933413C19Rik)
RIKEN cDNA 4933413C19 gene 		ENSMUST00000162380 (4933413C19Rik-001) 28580533-28583294 sense_intronic
ENSMUSG00000092182 (Gm20407)
predicted gene 20407 		ENSMUST00000172891 (Gm20407-001) 27994197-27995693 processed_transcript
ENSMUSG00000092617 (Gm8412)
predicted gene 8412 		ENSMUST00000077493 (Gm8412-001) 27858058-27858497 processed_pseudogene
ENSMUSG00000097735 (D930032P07Rik)
RIKEN cDNA D930032P07 gene 		ENSMUST00000181393 (D930032P07Rik-201) 28678224-28720027 lincRNA
ENSMUST00000181625 (D930032P07Rik-202) 28678228-28719752 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000F0_0001ENSDARG00000014550ENSDART00000041236ENSDART00000144234ENSDART00000144882ENSDARG00000069726ENSDART00000142833CIL_0000F0_0002ENSMUSG00000040929ENSMUST00000046898ENSMUST00000165566ENSMUST00000172498ENSMUST00000172907ENSMUST00000173161ENSMUST00000173863ENSMUST00000174420ENSMUST00000174850ENSMUSG00000052942ENSMUST00000065113ENSMUST00000112612ENSMUST00000159178ENSMUST00000159520ENSMUST00000159639ENSMUST00000160376ENSMUST00000161026ENSMUST00000161328ENSMUST00000162022ENSMUST00000162873ENSMUSG00000089952ENSMUST00000162380ENSMUSG00000092182ENSMUST00000172891ENSMUSG00000092617ENSMUST00000077493ENSMUSG00000097735ENSMUST00000181393ENSMUST00000181625
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000F0_0001ENSDARG00000014550ENSDART00000041236ENSDARG00000069726ENSDART00000142833CIL_0000F0_0002ENSMUSG00000040929ENSMUST00000046898ENSMUST00000165566ENSMUST00000172498ENSMUST00000172907ENSMUST00000173863ENSMUST00000174850ENSMUSG00000052942ENSMUST00000065113ENSMUST00000112612ENSMUST00000159520ENSMUST00000159639ENSMUST00000160376ENSMUST00000161026ENSMUST00000161328ENSMUST00000162022ENSMUST00000162873ENSMUSG00000089952ENSMUST00000162380ENSMUSG00000092182ENSMUST00000172891ENSMUSG00000092617ENSMUST00000077493ENSMUSG00000097735ENSMUST00000181393ENSMUST00000181625
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014550 ENSDART00000041236 N/A N/A N/A 3.697±3.89 N/A N/A 0.468±0.08 0.601±0.00 N/A N/A 0.635±0.00 N/A N/A N/A
ENSDART00000144234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000144882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000069726 ENSDART00000142833 N/A N/A N/A 0.289±0.11 N/A N/A 0.041±0.00 0.837±0.12 0.059±0.00 N/A 1.156±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040929 ENSMUST00000046898 N/A N/A N/A N/A 0.524±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165566 0.069±0.00 0.478±0.14 N/A 3.139±0.66 0.655±0.09 0.404±0.13 N/A 0.776±0.10 0.131±0.01 N/A 0.098±0.05 1.471±0.67 0.288±0.16 0.567±0.40
ENSMUST00000172498 N/A N/A N/A N/A N/A N/A 0.192±0.00 N/A N/A N/A N/A 1.228±0.00 N/A N/A
ENSMUST00000172907 0.449±0.25 N/A N/A N/A 0.357±0.00 0.531±0.22 0.251±0.05 0.452±0.09 0.132±0.00 0.471±0.00 N/A 1.317±0.26 0.565±0.00 8.182±2.26
ENSMUST00000173161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173863 N/A N/A N/A N/A N/A 0.421±0.00 N/A N/A 0.276±0.00 N/A N/A 2.552±0.39 N/A 4.790±0.73
ENSMUST00000174420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174850 0.504±0.00 0.304±0.00 N/A 4.696±0.00 N/A 0.154±0.00 0.152±0.00 N/A N/A N/A N/A 1.175±0.19 N/A 5.909±0.45
ENSMUSG00000052942 ENSMUST00000065113 N/A 0.414±0.00 N/A 0.249±0.00 N/A 0.565±0.10 N/A 1.665±0.00 N/A 0.689±0.28 N/A 0.640±0.03 N/A 0.117±0.00
ENSMUST00000112612 N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.02 N/A N/A N/A N/A N/A
ENSMUST00000159178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159520 N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159639 N/A N/A N/A N/A N/A N/A N/A N/A 0.256±0.14 N/A N/A N/A N/A N/A
ENSMUST00000160376 N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161026 1.746±0.00 0.739±0.29 N/A N/A 0.452±0.13 0.771±0.10 0.123±0.04 2.918±0.71 0.038±0.01 0.943±0.21 N/A 2.343±0.35 0.213±0.09 0.180±0.09
ENSMUST00000161328 N/A N/A N/A N/A N/A N/A 0.173±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162022 2.485±1.71 0.803±0.14 0.430±0.07 0.377±0.21 0.284±0.21 1.121±0.20 0.039±0.01 6.119±1.47 0.052±0.03 1.183±0.28 0.038±0.02 1.709±0.57 0.517±0.32 0.220±0.06
ENSMUST00000162873 1.219±0.08 N/A N/A N/A 1.408±0.57 N/A N/A N/A 0.070±0.03 N/A 0.068±0.03 N/A N/A N/A
ENSMUSG00000089952 ENSMUST00000162380 0.125±0.11 0.074±0.02 0.023±0.01 0.047±0.03 0.039±0.02 0.054±0.02 0.021±0.01 0.268±0.15 0.008±0.00 0.369±0.09 N/A 0.070±0.05 0.020±0.00 0.502±0.00
ENSMUSG00000092182 ENSMUST00000172891 0.119±0.00 N/A N/A N/A N/A 0.309±0.00 0.153±0.04 N/A 0.033±0.00 0.194±0.00 N/A N/A N/A 0.113±0.05
ENSMUSG00000092617 ENSMUST00000077493 0.135±0.02 0.230±0.00 0.028±0.00 0.292±0.12 N/A N/A 0.120±0.00 N/A 0.036±0.00 0.195±0.07 N/A 0.601±0.35 0.041±0.01 0.333±0.00
ENSMUSG00000097735 ENSMUST00000181393 N/A N/A N/A N/A N/A 0.085±0.00 N/A N/A N/A N/A N/A N/A 0.005±0.00 0.083±0.07
ENSMUST00000181625 N/A 0.106±0.00 N/A 0.036±0.02 0.096±0.06 N/A 0.028±0.00 0.081±0.01 N/A N/A N/A 0.018±0.00 0.040±0.01 0.136±0.07

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