C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GLIS family zinc finger 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065113 Glis3-003 ENSMUSG00000052942 10090 - 19:28262364-28679666 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLungOvaryTestisENSMUST00000065113
Transcript ID Adrenal Brain Colon Kidney Lung Ovary Testis
ENSMUST00000065113 0.414±0.00 0.249±0.00 0.565±0.10 1.665±0.00 0.689±0.28 0.640±0.03 0.117±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000F0 CIL_0000F0_0002 CGP 19:27761721-28680077
CIL_0000NI CIL_0000NI_0002 CGP 19:28258851-28913960

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324333 GLIS3-003 protein_coding Homo_sapiens 0 2100
ENST00000381971 GLIS3-008 protein_coding Homo_sapiens 0 2100
ENST00000461870 GLIS3-019 processed_transcript Homo_sapiens 0 1227
ENST00000463680 GLIS3-020 retained_intron Homo_sapiens 0 442
ENST00000464391 GLIS3-007 processed_transcript Homo_sapiens 1e-39 167
ENST00000467497 GLIS3-005 retained_intron Homo_sapiens 0 1138

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