C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Nedd4 family interacting protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053253 Ndfip2 10090 + 14:105258573-105309298 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000127286 Ndfip2-004 105292681-105308803 retained_intron
  ENSMUST00000138283 Ndfip2-003 105258753-105308871 protein_coding
  ENSMUST00000149358 Ndfip2-006 105294546-105308869 processed_transcript
  ENSMUST00000149781 Ndfip2-005 105292289-105308869 retained_intron
  ENSMUST00000155351 Ndfip2-002 105258818-105294944 retained_intron
  ENSMUST00000181969 Ndfip2-001 105258573-105309298 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000138283ENSMUST00000149358ENSMUST00000149781ENSMUST00000181969
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000138283 17.388±3.50 35.786±6.14 8.077±0.10 16.084±1.81 17.416±5.32 69.498±9.50 7.063±1.18 41.972±6.69 19.163±9.37 27.289±3.80 1.506±0.38 28.568±8.67 7.943±5.31 12.795±7.41
ENSMUST00000149358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.988±0.00 3.008±0.45 5.399±2.94 6.172±4.25
ENSMUST00000149781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.06 N/A N/A
ENSMUST00000181969 5.425±0.49 3.908±0.50 8.169±1.22 17.090±7.37 5.221±0.97 24.705±12.45 2.672±0.23 8.835±1.32 6.686±2.78 8.097±1.28 3.862±0.39 4.771±0.97 6.638±5.74 4.852±2.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083L CIL_00083L_0002 VISTA 14:105076563-105679035
CIL_0002EH CIL_0002EH_0002 CGP 14:105106751-105309298

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005768 IEA endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0007165 IEA signal transduction
GO:0010629 IEA negative regulation of gene expression
GO:0016021 ISM integral component of membrane
GO:0031398 IEA positive regulation of protein ubiquitination
GO:0032410 IEA negative regulation of transporter activity
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050699 IEA WW domain binding
GO:0051224 IEA negative regulation of protein transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033928 ndfip2 Nedd4 family interacting protein 2 protein_coding Danio_rerio
ENSG00000102471 NDFIP2 Nedd4 family interacting protein 2 protein_coding Homo_sapiens

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