C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Nedd4 family interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181969 Ndfip2-001 ENSMUSG00000053253 10090 + 14:105258573-105309298 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000181969
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000181969 5.425±0.49 3.908±0.50 8.169±1.22 17.090±7.37 5.221±0.97 24.705±12.45 2.672±0.23 8.835±1.32 6.686±2.78 8.097±1.28 3.862±0.39 4.771±0.97 6.638±5.74 4.852±2.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083L CIL_00083L_0002 VISTA 14:105076563-105679035
CIL_0002EH CIL_0002EH_0002 CGP 14:105106751-105309298

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005768 IEA endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0007165 IEA signal transduction
GO:0010629 IEA negative regulation of gene expression
GO:0016021 ISM integral component of membrane
GO:0031398 IEA positive regulation of protein ubiquitination
GO:0032410 IEA negative regulation of transporter activity
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050699 IEA WW domain binding
GO:0051224 IEA negative regulation of protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000218652 NDFIP2-001 protein_coding Homo_sapiens 0 1295
ENST00000465762 NDFIP2-002 nonsense_mediated_decay Homo_sapiens 0 298
ENST00000487865 NDFIP2-004 protein_coding Homo_sapiens 0 621
ENST00000612570 NDFIP2-201 protein_coding Homo_sapiens 0 1325
ENST00000620924 NDFIP2-005 protein_coding Homo_sapiens 0 1120

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