C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil-helix-coiled-coil-helix domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066379 Chchd3-001 ENSMUSG00000053768 10090 - 6:32792217-33060260 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066379
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066379 18.849±5.50 15.415±2.53 25.642±0.30 11.973±3.76 16.580±6.58 10.096±1.80 62.107±2.30 25.204±4.87 29.091±14.57 8.742±1.39 122.011±4.93 12.813±11.68 32.231±10.80 12.480±1.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024M CIL_00024M_0003 CGP 6:32144268-33060260
CIL_00024T CIL_00024T_0003 CGP 6:32790976-33973979

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0001227 ISS RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006351 IEA transcription, DNA-templated
GO:0007007 IEA inner mitochondrial membrane organization
GO:0008053 IEA mitochondrial fusion
GO:0019902 ISS phosphatase binding
GO:0032947 IMP protein complex scaffold
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262570 CHCHD3-001 protein_coding Homo_sapiens 0 953
ENST00000423635 CHCHD3-004 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000425516 CHCHD3P1-001 processed_pseudogene Homo_sapiens 0 507
ENST00000446783 CHCHD3P3-001 processed_pseudogene Homo_sapiens 0 678
ENST00000448878 CHCHD3-003 protein_coding Homo_sapiens 0 856
ENST00000457942 CHCHD3-006 nonsense_mediated_decay Homo_sapiens 0 289
ENST00000466644 CHCHD3-005 retained_intron Homo_sapiens 0 643
ENST00000476546 CHCHD3-002 processed_transcript Homo_sapiens 0 590
ENST00000481152 CHCHD3-008 processed_transcript Homo_sapiens 0 270
ENST00000496427 CHCHD3-007 processed_transcript Homo_sapiens 0 647

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