C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106039 Pkp3-002 ENSMUSG00000054065 10090 + 7:141078218-141090510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungMusclePlacentaENSMUST00000106039
Transcript ID Brain Liver Lung Muscle Placenta
ENSMUST00000106039 0.196±0.08 0.096±0.00 2.753±0.41 0.181±0.04 1.674±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UH CIL_0002UH_0002 CGP 7:141061274-141090510
CIL_0002AQ CIL_0002AQ_0002 CGP 7:141078218-141100546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002159 IEA desmosome assembly
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005886 IEA plasma membrane
GO:0005914 ISS spot adherens junction
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030057 IDA desmosome
GO:0050839 IEA cell adhesion molecule binding
GO:0090002 IEA establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331563 PKP3-001 protein_coding Homo_sapiens 0 2641
ENST00000524646 PKP3-008 retained_intron Homo_sapiens 0 230
ENST00000526971 PKP3-009 retained_intron Homo_sapiens 0 512
ENST00000527442 PKP3-004 protein_coding Homo_sapiens 0 760
ENST00000528036 PKP3-005 protein_coding Homo_sapiens 0 857
ENST00000530695 PKP3-011 processed_transcript Homo_sapiens 0 287
ENST00000531857 PKP3-006 protein_coding Homo_sapiens 0 606
ENST00000533069 PKP3-007 retained_intron Homo_sapiens 3e-36 156
ENST00000533249 PKP3-003 protein_coding Homo_sapiens 0 1031
ENST00000534401 PKP3-002 protein_coding Homo_sapiens 0 656

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