C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066873 Pkp3-001 ENSMUSG00000054065 10090 + 7:141079760-141090510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000066873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000066873 3.858±0.25 0.032±0.00 7.979±1.96 0.196±0.13 7.863±3.37 41.143±4.35 0.083±0.00 5.247±2.12 0.240±0.13 9.426±1.92 0.171±0.00 2.713±1.53 11.493±10.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UH CIL_0002UH_0002 CGP 7:141061274-141090510
CIL_0002AQ CIL_0002AQ_0002 CGP 7:141078218-141100546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005914 ISS spot adherens junction
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030057 IDA desmosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331563 PKP3-001 protein_coding Homo_sapiens 0 2693
ENST00000524646 PKP3-008 retained_intron Homo_sapiens 0 230
ENST00000526971 PKP3-009 retained_intron Homo_sapiens 0 512
ENST00000527442 PKP3-004 protein_coding Homo_sapiens 0 760
ENST00000528036 PKP3-005 protein_coding Homo_sapiens 0 857
ENST00000530695 PKP3-011 processed_transcript Homo_sapiens 0 287
ENST00000531857 PKP3-006 protein_coding Homo_sapiens 0 606
ENST00000533069 PKP3-007 retained_intron Homo_sapiens 3e-36 156
ENST00000533249 PKP3-003 protein_coding Homo_sapiens 0 1031
ENST00000534401 PKP3-002 protein_coding Homo_sapiens 0 654

Loading