C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169862 Taf4b-201 ENSMUSG00000054321 10090 + 18:14783245-14900359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169862
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169862 1.247±0.56 3.256±0.59 0.482±0.25 0.215±0.10 1.853±0.92 1.304±0.17 0.360±0.14 0.579±0.39 0.376±0.16 1.560±0.33 0.275±0.08 4.569±2.80 1.045±0.39 2.585±1.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LU CIL_0007LU_0002 UCNEbase 18:13186157-15176263
CIL_0000QZ CIL_0000QZ_0002 CGP 18:14706151-14900359
CIL_0006ER CIL_0006ER_0002 CGP 18:14783245-15151446

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 TAS transcription factor complex
GO:0005669 IEA transcription factor TFIID complex
GO:0005730 IEA nucleolus
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0051059 IEA NF-kappaB binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269142 TAF4B-002 protein_coding Homo_sapiens 0 2567
ENST00000400466 TAF4B-201 protein_coding Homo_sapiens 0 2483
ENST00000418698 TAF4B-003 nonsense_mediated_decay Homo_sapiens 0 1526
ENST00000504528 RP11-119H12.4-001 processed_pseudogene Homo_sapiens 0 1182
ENST00000578121 TAF4B-001 protein_coding Homo_sapiens 0 2510

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