C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136107 Whsc1l1-002 ENSMUSG00000054823 10090 + 8:25602284-25674907 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000136107
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000136107 2.379±0.61 8.669±5.21 2.976±0.00 10.964±1.27 3.961±1.68 2.680±0.93 2.227±0.08 5.223±0.72 3.039±0.36 0.590±0.03 3.898±1.05 9.177±2.24 1.538±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D9 CIL_0008D9_0002 VISTA 8:25042689-25644335
CIL_0008H7 CIL_0008H7_0002 VISTA 8:25139932-25741457
CIL_0008SM CIL_0008SM_0002 VISTA 8:25140188-25742103
CIL_0008NR CIL_0008NR_0002 VISTA 8:25243011-25845762

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000138045 whsc1l1-001 protein_coding Danio_rerio 0 206
ENSDART00000091115 whsc1l1-201 protein_coding Danio_rerio 4e-32 145
ENST00000316985 WHSC1L1-002 protein_coding Homo_sapiens 0 1759
ENST00000317025 WHSC1L1-001 protein_coding Homo_sapiens 0 1759
ENST00000433384 WHSC1L1-003 protein_coding Homo_sapiens 0 1759
ENST00000527502 WHSC1L1-005 protein_coding Homo_sapiens 0 1759
ENST00000528627 WHSC1L1-011 protein_coding Homo_sapiens 0 577
ENST00000529223 WHSC1L1-009 protein_coding Homo_sapiens 0 675
ENST00000534155 WHSC1L1-008 protein_coding Homo_sapiens 0 453
ENST00000534539 WHSC1L1-010 protein_coding Homo_sapiens 2e-39 165
ENST00000587110 RP11-209M4.1-001 processed_pseudogene Homo_sapiens 0 902

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