C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146919 Whsc1l1-003 ENSMUSG00000054823 10090 + 8:25602284-25677972 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000146919
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000146919 2.082±0.10 2.940±0.78 2.946±0.00 3.210±1.19 2.640±0.58 0.956±0.06 2.593±0.37 1.862±0.24 2.659±0.10 1.139±0.25 2.734±0.79 7.160±0.50 1.538±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D9 CIL_0008D9_0002 VISTA 8:25042689-25644335
CIL_0008H7 CIL_0008H7_0002 VISTA 8:25139932-25741457
CIL_0008SM CIL_0008SM_0002 VISTA 8:25140188-25742103
CIL_0008NR CIL_0008NR_0002 VISTA 8:25243011-25845762

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046976 IDA histone methyltransferase activity (H3-K27 specific)
GO:0051568 IDA histone H3-K4 methylation
GO:0070734 IDA histone H3-K27 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000138045 whsc1l1-001 protein_coding Danio_rerio 0 206
ENSDART00000091115 whsc1l1-201 protein_coding Danio_rerio 4e-32 145
ENST00000316985 WHSC1L1-002 protein_coding Homo_sapiens 0 2158
ENST00000317025 WHSC1L1-001 protein_coding Homo_sapiens 0 1788
ENST00000433384 WHSC1L1-003 protein_coding Homo_sapiens 0 1788
ENST00000525081 WHSC1L1-007 processed_transcript Homo_sapiens 0 983
ENST00000527502 WHSC1L1-005 protein_coding Homo_sapiens 0 1788
ENST00000528627 WHSC1L1-011 protein_coding Homo_sapiens 0 252
ENST00000529223 WHSC1L1-009 protein_coding Homo_sapiens 0 675
ENST00000534155 WHSC1L1-008 protein_coding Homo_sapiens 0 453
ENST00000534539 WHSC1L1-010 protein_coding Homo_sapiens 2e-39 165
ENST00000587110 RP11-209M4.1-001 processed_pseudogene Homo_sapiens 0 902

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