C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142395 Whsc1l1-005 ENSMUSG00000054823 10090 + 8:25602284-25719667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000142395
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000142395 2.572±0.97 2.161±0.32 5.049±0.00 7.592±2.72 3.970±0.23 2.335±0.27 0.857±0.50 3.438±1.18 2.420±1.28 4.063±0.37 0.636±0.17 3.032±0.91 7.397±1.74 1.614±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D9 CIL_0008D9_0002 VISTA 8:25042689-25644335
CIL_0008H7 CIL_0008H7_0002 VISTA 8:25139932-25741457
CIL_0008SM CIL_0008SM_0002 VISTA 8:25140188-25742103
CIL_0008NR CIL_0008NR_0002 VISTA 8:25243011-25845762

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016571 IEA histone methylation
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046976 IDA histone methyltransferase activity (H3-K27 specific)
GO:0051568 IDA histone H3-K4 methylation
GO:0070734 IDA histone H3-K27 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000138045 whsc1l1-001 protein_coding Danio_rerio 0 206
ENSDART00000091115 whsc1l1-201 protein_coding Danio_rerio 1e-31 145
ENST00000316985 WHSC1L1-002 protein_coding Homo_sapiens 0 1788
ENST00000317025 WHSC1L1-001 protein_coding Homo_sapiens 0 4652
ENST00000433384 WHSC1L1-003 protein_coding Homo_sapiens 0 2564
ENST00000526050 WHSC1L1-013 retained_intron Homo_sapiens 0 339
ENST00000527502 WHSC1L1-005 protein_coding Homo_sapiens 0 3831
ENST00000528304 WHSC1L1-012 retained_intron Homo_sapiens 0 499
ENST00000528627 WHSC1L1-011 protein_coding Homo_sapiens 0 252
ENST00000528828 WHSC1L1-004 retained_intron Homo_sapiens 0 767
ENST00000529223 WHSC1L1-009 protein_coding Homo_sapiens 0 675
ENST00000534155 WHSC1L1-008 protein_coding Homo_sapiens 0 453
ENST00000534539 WHSC1L1-010 protein_coding Homo_sapiens 2e-39 165
ENST00000587110 RP11-209M4.1-001 processed_pseudogene Homo_sapiens 0 902

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