C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 13 (isopeptidase T-3)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072312 Usp13-001 ENSMUSG00000056900 10090 + 3:32817546-32938071 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072312
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072312 1.159±0.69 0.839±0.09 2.113±0.73 2.806±2.55 0.166±0.00 22.059±3.19 0.109±0.04 0.029±0.03 1.388±0.43 44.784±4.38 0.613±0.22 0.303±0.15 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049V CIL_00049V_0003 CGP 3:32736990-32938071
CIL_0003YE CIL_0003YE_0003 CGP 3:32817546-33143247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005575 ND cellular_component
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006914 IEA autophagy
GO:0008242 IEA omega peptidase activity
GO:0008270 IEA zinc ion binding
GO:0008283 ISS cell proliferation
GO:0010506 ISS regulation of autophagy
GO:0031625 IEA ubiquitin protein ligase binding
GO:0043130 ISS ubiquitin binding
GO:0050821 ISS protein stabilization
GO:0070536 ISS protein K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000065293 usp13-001 protein_coding Danio_rerio 3.00004e-41 176
ENST00000263966 USP13-001 protein_coding Homo_sapiens 0 3210
ENST00000482333 USP13-002 processed_transcript Homo_sapiens 0 1978
ENST00000496897 USP13-003 protein_coding Homo_sapiens 0 3011
ENST00000497155 USP13-006 protein_coding Homo_sapiens 0 1105
ENST00000497380 USP13-005 nonsense_mediated_decay Homo_sapiens 0 361

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