C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 13 (isopeptidase T-3)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108228 Usp13-002 ENSMUSG00000056900 10090 + 3:32817571-32933286 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108228
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108228 1.525±0.91 0.395±0.00 1.020±0.79 0.846±0.00 7.740±0.00 0.179±0.07 0.073±0.04 0.689±0.25 18.685±1.84 0.584±0.13 0.293±0.07 0.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049V CIL_00049V_0003 CGP 3:32736990-32938071
CIL_0003YE CIL_0003YE_0003 CGP 3:32817546-33143247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0008242 IEA omega peptidase activity
GO:0008270 IEA zinc ion binding
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000065293 usp13-001 protein_coding Danio_rerio 9.99967e-42 176
ENST00000263966 USP13-001 protein_coding Homo_sapiens 0 3171
ENST00000482333 USP13-002 processed_transcript Homo_sapiens 0 1960
ENST00000496897 USP13-003 protein_coding Homo_sapiens 0 2974
ENST00000497155 USP13-006 protein_coding Homo_sapiens 0 1105
ENST00000497380 USP13-005 nonsense_mediated_decay Homo_sapiens 0 361

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