C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: early B cell factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057098 Ebf1 10090 + 11:44617317-45008091 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000081265 Ebf1-001 44617317-45008091 protein_coding
  ENSMUST00000101326 Ebf1-002 44617317-45005529 protein_coding
  ENSMUST00000109268 Ebf1-003 44617317-45004995 protein_coding
  ENSMUST00000135993 Ebf1-006 44618179-44643469 processed_transcript
  ENSMUST00000138452 Ebf1-007 44621761-44643459 processed_transcript
  ENSMUST00000140822 Ebf1-004 44912138-44972914 processed_transcript
  ENSMUST00000149997 Ebf1-005 44618116-44646820 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081265ENSMUST00000101326ENSMUST00000109268ENSMUST00000138452ENSMUST00000149997
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081265 9.710±2.96 2.109±0.80 0.953±0.08 3.183±2.77 7.751±1.46 0.722±0.15 1.652±0.60 1.497±0.34 0.332±0.46 2.335±0.30 0.683±0.19 1.507±0.63 0.279±0.21 0.174±0.11
ENSMUST00000101326 16.550±4.91 8.106±0.82 N/A 5.137±0.45 21.239±6.47 1.390±0.56 2.470±0.77 3.046±1.17 0.242±0.24 4.999±1.54 0.386±0.00 5.193±2.25 0.141±0.08 0.459±0.09
ENSMUST00000109268 14.154±7.60 2.595±1.16 1.291±0.07 3.371±0.00 12.875±4.38 1.491±0.73 2.465±0.55 2.340±0.94 0.090±0.03 1.343±0.11 0.384±0.05 3.173±1.90 N/A 0.188±0.00
ENSMUST00000138452 N/A N/A N/A 8.183±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149997 N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.17 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008O4 CIL_0008O4_0002 VISTA 11:44325594-44926697
CIL_0008X2 CIL_0008X2_0002 VISTA 11:44334332-44935609
CIL_00087L CIL_00087L_0002 VISTA 11:44356475-44957869
CIL_0007UN CIL_0007UN_0002 VISTA 11:44499727-45101437
CIL_00043G CIL_00043G_0002 CGP 11:44518964-45008091
CIL_0008FV CIL_0008FV_0002 VISTA 11:44603240-45204998
CIL_0005AQ CIL_0005AQ_0002 CGP 11:44617317-45910625

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity
GO:0070742 IEA C2H2 zinc finger domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016116 ebf1a early B-cell factor 1a protein_coding Danio_rerio
ENSDARG00000069196 ebf1b early B-cell factor 1b protein_coding Danio_rerio
ENSG00000164330 EBF1 early B-cell factor 1 protein_coding Homo_sapiens

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