C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B cell factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101326 Ebf1-002 ENSMUSG00000057098 10090 + 11:44617317-45005529 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101326
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101326 16.550±4.91 8.106±0.82 5.137±0.45 21.239±6.47 1.390±0.56 2.470±0.77 3.046±1.17 0.242±0.24 4.999±1.54 0.386±0.00 5.193±2.25 0.141±0.08 0.459±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008O4 CIL_0008O4_0002 VISTA 11:44325594-44926697
CIL_0008X2 CIL_0008X2_0002 VISTA 11:44334332-44935609
CIL_00087L CIL_00087L_0002 VISTA 11:44356475-44957869
CIL_0007UN CIL_0007UN_0002 VISTA 11:44499727-45101437
CIL_00043G CIL_00043G_0002 CGP 11:44518964-45008091
CIL_0008FV CIL_0008FV_0002 VISTA 11:44603240-45204998
CIL_0005AQ CIL_0005AQ_0002 CGP 11:44617317-45910625

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity
GO:0070742 IEA C2H2 zinc finger domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313708 EBF1-001 protein_coding Homo_sapiens 0 3703
ENST00000380654 EBF1-002 protein_coding Homo_sapiens 0 2139
ENST00000517373 EBF1-006 protein_coding Homo_sapiens 0 2076
ENST00000518323 EBF1-007 processed_transcript Homo_sapiens 0 595
ENST00000518836 EBF1-010 processed_transcript Homo_sapiens 0 3520
ENST00000519739 EBF1-009 retained_intron Homo_sapiens 0 2961
ENST00000519890 EBF1-005 retained_intron Homo_sapiens 0 2767
ENST00000522192 EBF1-003 retained_intron Homo_sapiens 0 2484
ENST00000523315 EBF1-004 processed_transcript Homo_sapiens 0 553
ENST00000523464 EBF1-008 processed_transcript Homo_sapiens 0 880
ENST00000622875 EBF1-201 protein_coding Homo_sapiens 0 2641

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