C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: early B-cell factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164330 EBF1 9606 - 5:158695916-159099761 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313708 EBF1-001 158695920-159099761 protein_coding
  ENST00000380654 EBF1-002 158698664-159099693 protein_coding
  ENST00000517373 EBF1-006 158698689-159099761 protein_coding
  ENST00000518323 EBF1-007 158698641-158708009 processed_transcript
  ENST00000518836 EBF1-010 158695920-159099757 processed_transcript
  ENST00000519739 EBF1-009 158695920-159096370 retained_intron
  ENST00000519890 EBF1-005 158695920-159073794 retained_intron
  ENST00000522192 EBF1-003 158698885-159096606 retained_intron
  ENST00000523315 EBF1-004 159084666-159097623 processed_transcript
  ENST00000523464 EBF1-008 158731044-159019129 processed_transcript
  ENST00000622875 EBF1-201 158695916-158840123 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313708ENST00000380654ENST00000517373ENST00000518836ENST00000519739ENST00000523315ENST00000622875
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313708 8.491±0.00 2.671±0.00 0.688±0.00 0.313±0.00 6.538±5.32 1.428±0.39 0.995±0.12 0.904±0.00 4.180±0.00 1.312±0.00 0.284±0.00 1.432±0.62 0.983±0.75 2.978±0.00
ENST00000380654 N/A N/A N/A 0.422±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.224±0.00 1.132±0.00
ENST00000517373 N/A N/A 2.872±0.00 N/A 4.170±0.00 3.898±0.00 2.663±0.00 0.618±0.00 5.331±0.00 3.658±0.00 1.370±0.00 4.513±0.00 N/A N/A
ENST00000518836 N/A 1.811±0.00 N/A 0.183±0.00 7.924±6.48 1.209±0.00 0.743±0.00 N/A N/A 1.160±0.00 0.598±0.00 0.784±0.60 1.638±0.00 4.925±0.00
ENST00000519739 N/A N/A N/A 0.423±0.00 N/A N/A N/A N/A N/A 0.678±0.00 N/A N/A N/A N/A
ENST00000523315 N/A N/A 28.567±0.00 1.490±0.00 22.522±0.00 26.152±0.00 5.740±0.00 1.386±0.00 47.761±0.00 18.903±0.00 21.766±0.00 13.329±0.00 N/A N/A
ENST00000622875 N/A 2.559±0.00 N/A N/A N/A N/A N/A N/A 0.096±0.00 N/A 0.717±0.00 N/A N/A 1.811±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N2 CIL_0007N2_0001 UCNEbase 5:157771686-159082579
CIL_00016F CIL_00016F_0002 CGP 5:157785743-159099761
CIL_00080A CIL_00080A_0001 VISTA 5:158290760-158892059
CIL_0008GW CIL_0008GW_0001 VISTA 5:158416416-159017717
CIL_0008FV CIL_0008FV_0001 VISTA 5:158500688-159102492
CIL_0007UN CIL_0007UN_0001 VISTA 5:158613954-159215603

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity
GO:0070742 IEA C2H2 zinc finger domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016116 ebf1a early B-cell factor 1a protein_coding Danio_rerio
ENSDARG00000069196 ebf1b early B-cell factor 1b protein_coding Danio_rerio
ENSMUSG00000057098 Ebf1 early B cell factor 1 protein_coding Mus_musculus

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