C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B cell factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081265 Ebf1-001 ENSMUSG00000057098 10090 + 11:44617317-45008091 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081265
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081265 9.710±2.96 2.109±0.80 0.953±0.08 3.183±2.77 7.751±1.46 0.722±0.15 1.652±0.60 1.497±0.34 0.332±0.46 2.335±0.30 0.683±0.19 1.507±0.63 0.279±0.21 0.174±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008O4 CIL_0008O4_0002 VISTA 11:44325594-44926697
CIL_0008X2 CIL_0008X2_0002 VISTA 11:44334332-44935609
CIL_00087L CIL_00087L_0002 VISTA 11:44356475-44957869
CIL_0007UN CIL_0007UN_0002 VISTA 11:44499727-45101437
CIL_00043G CIL_00043G_0002 CGP 11:44518964-45008091
CIL_0008FV CIL_0008FV_0002 VISTA 11:44603240-45204998
CIL_0005AQ CIL_0005AQ_0002 CGP 11:44617317-45910625

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313708 EBF1-001 protein_coding Homo_sapiens 0 3718
ENST00000380654 EBF1-002 protein_coding Homo_sapiens 0 2182
ENST00000517373 EBF1-006 protein_coding Homo_sapiens 0 2106
ENST00000518323 EBF1-007 processed_transcript Homo_sapiens 0 595
ENST00000518836 EBF1-010 processed_transcript Homo_sapiens 0 3535
ENST00000519739 EBF1-009 retained_intron Homo_sapiens 0 2976
ENST00000519890 EBF1-005 retained_intron Homo_sapiens 0 2782
ENST00000522192 EBF1-003 retained_intron Homo_sapiens 0 2497
ENST00000523315 EBF1-004 processed_transcript Homo_sapiens 0 553
ENST00000523464 EBF1-008 processed_transcript Homo_sapiens 0 894
ENST00000622875 EBF1-201 protein_coding Homo_sapiens 0 2656

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