C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: retinitis pigmentosa GTPase regulator interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181017 Rpgrip1-016 ENSMUSG00000057132 10090 + 14:52149518-52160296 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000181017
Transcript ID Testis
ENSMUST00000181017 79.980±2.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027O CIL_00027O_0002 CGP 14:52073380-52163546
CIL_00027P CIL_00027P_0002 CGP 14:52110704-52197239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005929 IDA cilium
GO:0005930 IDA axoneme
GO:0007601 IMP visual perception
GO:0031513 IDA nonmotile primary cilium
GO:0042462 IMP eye photoreceptor cell development
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382933 RPGRIP1-002 protein_coding Homo_sapiens 0 625
ENST00000400017 RPGRIP1-001 protein_coding Homo_sapiens 0 625
ENST00000553927 RPGRIP1-005 retained_intron Homo_sapiens 0 625
ENST00000555322 RPGRIP1-004 nonsense_mediated_decay Homo_sapiens 0 625
ENST00000555489 RPGRIP1-003 nonsense_mediated_decay Homo_sapiens 0 625
ENST00000555587 RPGRIP1-009 protein_coding Homo_sapiens 0 625
ENST00000556336 RPGRIP1-010 protein_coding Homo_sapiens 0 625
ENST00000557771 RPGRIP1-011 protein_coding Homo_sapiens 0 625

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