C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoblastoma binding protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057236 Rbbp4 10090 - 4:129307100-129335370 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102598 Rbbp4-001 129307100-129335370 protein_coding
  ENSMUST00000135585 Rbbp4-002 129328649-129335083 protein_coding
  ENSMUST00000140291 Rbbp4-004 129309517-129334644 processed_transcript
  ENSMUST00000147183 Rbbp4-003 129324824-129335249 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102598
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102598 31.128±9.59 19.134±1.34 32.529±3.57 32.929±19.16 23.672±2.34 19.273±2.26 16.362±1.64 23.842±1.52 28.519±18.26 22.838±1.11 10.568±0.51 25.505±6.05 18.972±10.38 26.453±11.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002A9 CIL_0002A9_0002 CGP 4:129219578-129308559
CIL_0002A8 CIL_0002A8_0002 CGP 4:129287617-129335370

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:ISS nucleus
GO:0005654 IEA nucleoplasm
GO:0006200 IEA ATP catabolic process
GO:0006260 IEA DNA replication
GO:0006335 IEA DNA replication-dependent nucleosome assembly
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0006338 TAS:ISS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008094 ISS DNA-dependent ATPase activity
GO:0016581 IDA NuRD complex
GO:0016589 IEA NURF complex
GO:0031492 IEA nucleosomal DNA binding
GO:0031497 ISS chromatin assembly
GO:0033186 ISS CAF-1 complex
GO:0035098 IDA ESC/E(Z) complex
GO:0042826 IEA histone deacetylase binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029058 rbb4 retinoblastoma binding protein 4 protein_coding Danio_rerio
ENSG00000162521 RBBP4 retinoblastoma binding protein 4 protein_coding Homo_sapiens

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