C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135585 Rbbp4-002 ENSMUSG00000057236 10090 - 4:129328649-129335083 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002A9 CIL_0002A9_0002 CGP 4:129219578-129308559
CIL_0002A8 CIL_0002A8_0002 CGP 4:129287617-129335370

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006338 TAS chromatin remodeling
GO:0016581 IDA NuRD complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373485 RBBP4-002 protein_coding Homo_sapiens 0 335
ENST00000373493 RBBP4-001 protein_coding Homo_sapiens 0 335
ENST00000398588 RBBP4P4-001 processed_pseudogene Homo_sapiens 0 313
ENST00000401893 RBBP4-017 retained_intron Homo_sapiens 0 335
ENST00000414241 RBBP4-011 protein_coding Homo_sapiens 0 333
ENST00000445722 RBBP4-013 protein_coding Homo_sapiens 0 333
ENST00000458695 RBBP4-003 protein_coding Homo_sapiens 0 333
ENST00000465780 RBBP4-005 retained_intron Homo_sapiens 0 235
ENST00000477563 RBBP4-006 nonsense_mediated_decay Homo_sapiens 0 335
ENST00000478252 RBBP4P2-001 processed_pseudogene Homo_sapiens 0 287
ENST00000490500 RBBP4-004 protein_coding Homo_sapiens 0 333
ENST00000492348 RBBP4-019 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000524393 RBBP4-015 processed_transcript Homo_sapiens 0 233
ENST00000525506 RBBP4-020 retained_intron Homo_sapiens 0 335
ENST00000526193 RBBP4-016 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000527118 RBBP4-014 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000619705 RBBP4P3-001 processed_pseudogene Homo_sapiens 0 302

Loading