C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L38
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057322 Rpl38 10090 + 11:114668524-114672331 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077915 Rpl38-002 114668548-114672331 protein_coding
  ENSMUST00000082092 Rpl38-004 114668626-114672331 protein_coding
  ENSMUST00000106599 Rpl38-003 114668609-114672331 protein_coding
  ENSMUST00000106602 Rpl38-001 114668524-114672331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077915ENSMUST00000082092ENSMUST00000106602
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077915 63.728±21.53 11.736±3.85 117.968±1.52 221.519±163.26 48.154±8.25 53.302±12.02 53.318±9.39 94.200±25.65 73.771±73.38 74.181±4.72 47.411±4.84 47.095±23.69 99.364±34.94 70.862±24.80
ENSMUST00000082092 N/A 2.315±0.00 N/A N/A 51.954±0.00 N/A N/A N/A 250.931±50.55 N/A N/A 1860.045±155.23 652.257±267.51 35.492±0.00
ENSMUST00000106602 99.119±22.39 15.771±2.32 N/A 200.311±52.06 59.041±20.70 90.893±16.80 74.625±11.42 141.953±40.92 167.715±137.89 94.570±6.16 214.929±24.63 78.771±85.09 261.396±125.00 141.457±36.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073F CIL_00073F_0002 CGP 11:113776374-114672331
CIL_0003AD CIL_0003AD_0003 CGP 11:114668524-114720977

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001503 IMP ossification
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0006417 IMP regulation of translation
GO:0007605 IMP sensory perception of sound
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0033291 IDA eukaryotic 80S initiation complex
GO:0034463 IDA 90S preribosome assembly
GO:0042474 IMP middle ear morphogenesis
GO:0048318 IMP axial mesoderm development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006413 rpl38 ribosomal protein L38 protein_coding Danio_rerio
ENSG00000172809 RPL38 ribosomal protein L38 protein_coding Homo_sapiens

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