C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106602 Rpl38-001 ENSMUSG00000057322 10090 + 11:114668524-114672331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106602
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106602 99.119±22.39 15.771±2.32 200.311±52.06 59.041±20.70 90.893±16.80 74.625±11.42 141.953±40.92 167.715±137.89 94.570±6.16 214.929±24.63 78.771±85.09 261.396±125.00 141.457±36.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073F CIL_00073F_0002 CGP 11:113776374-114672331
CIL_0003AD CIL_0003AD_0003 CGP 11:114668524-114720977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001503 IMP ossification
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0006417 IMP regulation of translation
GO:0007605 IMP sensory perception of sound
GO:0033291 IDA eukaryotic 80S initiation complex
GO:0034463 IDA 90S preribosome assembly
GO:0042474 IMP middle ear morphogenesis
GO:0048318 IMP axial mesoderm development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000145377 rpl38-002 protein_coding Danio_rerio 0 231
ENSDART00000021069 rpl38-001 protein_coding Danio_rerio 0 231

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