C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Wolf-Hirschhorn syndrome candidate 1 (human)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057406 Whsc1 10090 + 5:33820725-33897975 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000058096 Whsc1-002 33843141-33895712 protein_coding
  ENSMUST00000066854 Whsc1-201 33843112-33897966 protein_coding
  ENSMUST00000075812 Whsc1-001 33820725-33897966 protein_coding
  ENSMUST00000114397 Whsc1-004 33820744-33872502 protein_coding
  ENSMUST00000114399 Whsc1-009 33843112-33877282 protein_coding
  ENSMUST00000133870 Whsc1-010 33885498-33887703 retained_intron
  ENSMUST00000137191 Whsc1-007 33843112-33897975 nonsense_mediated_decay
  ENSMUST00000139845 Whsc1-006 33843112-33897975 nonsense_mediated_decay
  ENSMUST00000141416 Whsc1-003 33843196-33895495 nonsense_mediated_decay
  ENSMUST00000142080 Whsc1-005 33861069-33877290 protein_coding
  ENSMUST00000155880 Whsc1-008 33820829-33846182 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000058096ENSMUST00000066854ENSMUST00000075812ENSMUST00000114399ENSMUST00000141416ENSMUST00000142080
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000058096 N/A N/A N/A N/A N/A N/A N/A N/A 4.814±1.82 0.591±0.05 5.109±0.05 10.725±6.32 8.984±5.06
ENSMUST00000066854 1.085±0.03 N/A N/A 10.982±0.42 2.380±0.05 N/A 0.623±0.00 N/A 4.190±0.00 0.351±0.00 3.154±0.33 N/A N/A
ENSMUST00000075812 N/A 3.777±0.12 N/A 4.665±0.00 N/A 3.138±0.28 1.033±0.13 1.739±0.40 2.585±1.42 0.384±0.09 5.389±2.14 4.507±2.10 4.316±0.62
ENSMUST00000114399 N/A N/A N/A 1.627±0.00 N/A N/A N/A N/A N/A 0.407±0.00 N/A N/A N/A
ENSMUST00000141416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.473±0.00
ENSMUST00000142080 1.336±0.14 N/A 1.894±0.60 18.752±0.64 0.893±0.00 N/A 1.018±0.37 1.338±0.13 2.879±0.78 0.431±0.06 2.019±0.63 3.258±0.70 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006V8 CIL_0006V8_0002 CGP 5:33739673-33897975
CIL_0006V9 CIL_0006V9_0002 CGP 5:33820725-33936413

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003149 IMP membranous septum morphogenesis
GO:0003289 IMP atrial septum primum morphogenesis
GO:0003290 IMP atrial septum secundum morphogenesis
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010452 IDA histone H3-K36 methylation
GO:0016568 IDA chromatin modification
GO:0018024 IDA histone-lysine N-methyltransferase activity
GO:0031965 IEA nuclear membrane
GO:0034770 IDA histone H4-K20 methylation
GO:0043565 IDA sequence-specific DNA binding
GO:0048298 IMP positive regulation of isotype switching to IgA isotypes
GO:0060348 IMP bone development
GO:0070201 IMP regulation of establishment of protein localization
GO:2001032 IMP regulation of double-strand break repair via nonhomologous end joining

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026225 whsc1 Wolf-Hirschhorn syndrome candidate 1 protein_coding Danio_rerio
ENSG00000109685 WHSC1 Wolf-Hirschhorn syndrome candidate 1 protein_coding Homo_sapiens

Loading