C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | Wolf-Hirschhorn syndrome candidate 1 (human) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000139845  |
Whsc1-006 |
ENSMUSG00000057406 |
10090 | + |
5:33843112-33897975  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007TX | CIL_0007TX_0002 | VISTA | 5:33275293-33875875 |
| CIL_0006V8 | CIL_0006V8_0002 | CGP | 5:33739673-33897975 |
| CIL_0006V9 | CIL_0006V9_0002 | CGP | 5:33820725-33936413 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000122 | IGI | negative regulation of transcription from RNA polymerase II promoter |
| GO:0003149 | IMP | membranous septum morphogenesis |
| GO:0003289 | IMP | atrial septum primum morphogenesis |
| GO:0003290 | IMP | atrial septum secundum morphogenesis |
| GO:0003682 | IDA | chromatin binding |
| GO:0005634 | IDA | nucleus |
| GO:0006355 | IMP | regulation of transcription, DNA-templated |
| GO:0010452 | IDA | histone H3-K36 methylation |
| GO:0016568 | IDA | chromatin modification |
| GO:0018024 | IDA | histone-lysine N-methyltransferase activity |
| GO:0034770 | IDA | histone H4-K20 methylation |
| GO:0043565 | IDA | sequence-specific DNA binding |
| GO:0048298 | IMP | positive regulation of isotype switching to IgA isotypes |
| GO:0060348 | IMP | bone development |
| GO:0070201 | IMP | regulation of establishment of protein localization |
| GO:2001032 | IMP | regulation of double-strand break repair via nonhomologous end joining |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000312087
|
WHSC1-007 | nonsense_mediated_decay | Homo_sapiens | 0 | 5046 |
|
ENST00000353275
|
WHSC1-002 | nonsense_mediated_decay | Homo_sapiens | 0 | 2625 |
|
ENST00000382888
|
WHSC1-005 | protein_coding | Homo_sapiens | 0 | 2351 |
|
ENST00000382891
|
WHSC1-201 | protein_coding | Homo_sapiens | 0 | 2625 |
|
ENST00000382892
|
WHSC1-202 | protein_coding | Homo_sapiens | 0 | 2625 |
|
ENST00000382895
|
WHSC1-008 | protein_coding | Homo_sapiens | 0 | 2625 |
|
ENST00000398261
|
WHSC1-203 | protein_coding | Homo_sapiens | 0 | 2427 |
|
ENST00000420906
|
WHSC1-006 | protein_coding | Homo_sapiens | 0 | 2082 |
|
ENST00000436793
|
WHSC1-204 | protein_coding | Homo_sapiens | 0 | 902 |
|
ENST00000482415
|
WHSC1-003 | processed_transcript | Homo_sapiens | 0 | 2625 |
|
ENST00000503128
|
WHSC1-004 | protein_coding | Homo_sapiens | 0 | 2427 |
|
ENST00000503207
|
WHSC1-021 | processed_transcript | Homo_sapiens | 0 | 976 |
|
ENST00000505643
|
WHSC1-022 | processed_transcript | Homo_sapiens | 0 | 693 |
|
ENST00000507094
|
WHSC1-020 | retained_intron | Homo_sapiens | 0 | 628 |
|
ENST00000508299
|
WHSC1-019 | retained_intron | Homo_sapiens | 0 | 457 |
|
ENST00000508355
|
WHSC1-009 | retained_intron | Homo_sapiens | 0 | 1592 |
|
ENST00000508803
|
WHSC1-011 | protein_coding | Homo_sapiens | 0 | 2603 |
|
ENST00000509115
|
WHSC1-015 | protein_coding | Homo_sapiens | 0 | 1428 |
|
ENST00000511904
|
WHSC1-016 | nonsense_mediated_decay | Homo_sapiens | 9.00054e-42 | 174 |
|
ENST00000512700
|
WHSC1-012 | nonsense_mediated_decay | Homo_sapiens | 0 | 896 |
|
ENST00000514045
|
WHSC1-010 | protein_coding | Homo_sapiens | 0 | 2082 |
|
ENST00000514329
|
WHSC1-024 | protein_coding | Homo_sapiens | 0 | 660 |
|
ENST00000515806
|
WHSC1-014 | protein_coding | Homo_sapiens | 0 | 697 |
