C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Wolf-Hirschhorn syndrome candidate 1 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142080 Whsc1-005 ENSMUSG00000057406 10090 + 5:33861069-33877290 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000142080
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000142080 1.336±0.14 1.894±0.60 18.752±0.64 0.893±0.00 1.018±0.37 1.338±0.13 2.879±0.78 0.431±0.06 2.019±0.63 3.258±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006V8 CIL_0006V8_0002 CGP 5:33739673-33897975
CIL_0006V9 CIL_0006V9_0002 CGP 5:33820725-33936413

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312087 WHSC1-007 nonsense_mediated_decay Homo_sapiens 0 795
ENST00000353275 WHSC1-002 nonsense_mediated_decay Homo_sapiens 0 571
ENST00000382891 WHSC1-201 protein_coding Homo_sapiens 0 448
ENST00000382892 WHSC1-202 protein_coding Homo_sapiens 0 448
ENST00000382895 WHSC1-008 protein_coding Homo_sapiens 0 448
ENST00000398261 WHSC1-203 protein_coding Homo_sapiens 0 1254
ENST00000420906 WHSC1-006 protein_coding Homo_sapiens 0 448
ENST00000482415 WHSC1-003 processed_transcript Homo_sapiens 9.99967e-42 176
ENST00000503128 WHSC1-004 protein_coding Homo_sapiens 0 1254
ENST00000508803 WHSC1-011 protein_coding Homo_sapiens 0 448
ENST00000511904 WHSC1-016 nonsense_mediated_decay Homo_sapiens 9.00054e-42 174
ENST00000514045 WHSC1-010 protein_coding Homo_sapiens 0 448
ENST00000514329 WHSC1-024 protein_coding Homo_sapiens 1e-36 158

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