C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Wolf-Hirschhorn syndrome candidate 1 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075812 Whsc1-001 ENSMUSG00000057406 10090 + 5:33820725-33897966 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000075812
Transcript ID Adrenal Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000075812 3.777±0.12 4.665±0.00 3.138±0.28 1.033±0.13 1.739±0.40 2.585±1.42 0.384±0.09 5.389±2.14 4.507±2.10 4.316±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006V8 CIL_0006V8_0002 CGP 5:33739673-33897975
CIL_0006V9 CIL_0006V9_0002 CGP 5:33820725-33936413

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003149 IMP membranous septum morphogenesis
GO:0003289 IMP atrial septum primum morphogenesis
GO:0003290 IMP atrial septum secundum morphogenesis
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010452 IDA histone H3-K36 methylation
GO:0016568 IDA chromatin modification
GO:0018024 IDA histone-lysine N-methyltransferase activity
GO:0031965 IEA nuclear membrane
GO:0034770 IDA histone H4-K20 methylation
GO:0043565 IDA sequence-specific DNA binding
GO:0048298 IMP positive regulation of isotype switching to IgA isotypes
GO:0060348 IMP bone development
GO:0070201 IMP regulation of establishment of protein localization
GO:2001032 IMP regulation of double-strand break repair via nonhomologous end joining

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312087 WHSC1-007 nonsense_mediated_decay Homo_sapiens 0 2625
ENST00000353275 WHSC1-002 nonsense_mediated_decay Homo_sapiens 0 2625
ENST00000382888 WHSC1-005 protein_coding Homo_sapiens 0 2351
ENST00000382891 WHSC1-201 protein_coding Homo_sapiens 0 4691
ENST00000382892 WHSC1-202 protein_coding Homo_sapiens 0 4693
ENST00000382895 WHSC1-008 protein_coding Homo_sapiens 0 4693
ENST00000398261 WHSC1-203 protein_coding Homo_sapiens 0 2067
ENST00000420906 WHSC1-006 protein_coding Homo_sapiens 0 2074
ENST00000436793 WHSC1-204 protein_coding Homo_sapiens 0 902
ENST00000482415 WHSC1-003 processed_transcript Homo_sapiens 0 2796
ENST00000503128 WHSC1-004 protein_coding Homo_sapiens 0 2071
ENST00000503207 WHSC1-021 processed_transcript Homo_sapiens 0 976
ENST00000505643 WHSC1-022 processed_transcript Homo_sapiens 0 693
ENST00000507094 WHSC1-020 retained_intron Homo_sapiens 0 628
ENST00000508299 WHSC1-019 retained_intron Homo_sapiens 0 457
ENST00000508355 WHSC1-009 retained_intron Homo_sapiens 0 1598
ENST00000508803 WHSC1-011 protein_coding Homo_sapiens 0 4671
ENST00000509115 WHSC1-015 protein_coding Homo_sapiens 0 1432
ENST00000511904 WHSC1-016 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000512700 WHSC1-012 nonsense_mediated_decay Homo_sapiens 0 896
ENST00000514045 WHSC1-010 protein_coding Homo_sapiens 0 2076
ENST00000514329 WHSC1-024 protein_coding Homo_sapiens 0 660
ENST00000515806 WHSC1-014 protein_coding Homo_sapiens 0 701

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