C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear respiratory factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058440 Nrf1 10090 + 6:30047988-30153458 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004761 Nrf1-201 30089895-30129392 protein_coding
  ENSMUST00000069808 Nrf1-202 30089889-30144855 protein_coding
  ENSMUST00000069831 Nrf1-203 30089895-30129392 protein_coding
  ENSMUST00000115199 Nrf1-010 30076321-30129760 protein_coding
  ENSMUST00000115200 Nrf1-015 30048072-30130116 protein_coding
  ENSMUST00000115204 Nrf1-007 30048072-30145197 protein_coding
  ENSMUST00000115206 Nrf1-004 30048031-30144860 protein_coding
  ENSMUST00000115208 Nrf1-005 30048045-30152523 protein_coding
  ENSMUST00000115209 Nrf1-006 30048067-30152518 protein_coding
  ENSMUST00000115211 Nrf1-002 30048002-30153180 protein_coding
  ENSMUST00000115212 Nrf1-001 30047988-30153458 protein_coding
  ENSMUST00000123194 Nrf1-008 30047991-30098575 protein_coding
  ENSMUST00000130096 Nrf1-012 30089934-30090998 retained_intron
  ENSMUST00000132866 Nrf1-014 30116115-30140904 protein_coding
  ENSMUST00000133837 Nrf1-013 30097783-30116126 processed_transcript
  ENSMUST00000133928 Nrf1-016 30048042-30095346 protein_coding
  ENSMUST00000146827 Nrf1-011 30076340-30095381 protein_coding
  ENSMUST00000146988 Nrf1-003 30048029-30098908 retained_intron
  ENSMUST00000148990 Nrf1-009 30048151-30090038 processed_transcript
  ENSMUST00000167972 Nrf1-204 30089895-30151677 protein_coding
  ENSMUST00000170535 Nrf1-205 30089895-30144855 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069808ENSMUST00000115206ENSMUST00000115209ENSMUST00000115211ENSMUST00000115212ENSMUST00000123194ENSMUST00000132866ENSMUST00000167972
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.384±0.10 N/A 4.997±1.26 2.962±0.00
ENSMUST00000115206 N/A N/A N/A 1.642±0.00 3.073±0.00 N/A 1.561±0.22 N/A N/A N/A 1.092±0.36 2.819±0.00 4.320±1.23 4.193±0.74
ENSMUST00000115209 N/A N/A N/A N/A 3.279±0.00 4.743±0.00 N/A N/A N/A N/A 0.591±0.00 N/A N/A N/A
ENSMUST00000115211 5.687±1.11 2.365±0.59 4.786±1.03 8.565±4.77 5.907±2.07 6.842±2.16 2.537±0.53 5.339±2.29 7.790±7.47 6.229±1.47 1.386±0.54 10.350±4.57 3.602±1.12 2.058±0.37
ENSMUST00000115212 5.581±1.92 5.216±0.75 1.996±0.03 4.678±3.04 5.831±2.35 6.256±1.92 1.753±0.26 4.351±0.81 3.807±2.50 7.323±1.31 0.614±0.14 7.056±3.48 2.747±0.38 2.469±0.66
ENSMUST00000123194 N/A N/A N/A N/A 8.291±0.00 N/A N/A N/A 8.122±9.66 N/A N/A N/A N/A N/A
ENSMUST00000132866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.373±0.00 5.097±1.74 2.831±0.00
ENSMUST00000167972 N/A N/A N/A N/A N/A N/A 2.024±0.05 N/A 1.937±0.00 N/A 0.863±0.04 7.261±0.00 4.467±0.00 5.041±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YF CIL_0001YF_0002 CGP 6:30047988-30304539

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001666 IEA response to hypoxia
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 TAS transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007005 IMP mitochondrion organization
GO:0031100 IEA organ regeneration
GO:0032355 IEA response to estradiol
GO:0032496 IEA response to lipopolysaccharide
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051593 IEA response to folic acid
GO:0051602 IEA response to electrical stimulus
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000018 nrf1 nuclear respiratory factor 1 protein_coding Danio_rerio
ENSG00000106459 NRF1 nuclear respiratory factor 1 protein_coding Homo_sapiens

Loading