C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear respiratory factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115206 Nrf1-004 ENSMUSG00000058440 10090 + 6:30048031-30144860 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartMuscleOvaryPlacentaTestisENSMUST00000115206
Transcript ID Brain Breast Heart Muscle Ovary Placenta Testis
ENSMUST00000115206 1.642±0.00 3.073±0.00 1.561±0.22 1.092±0.36 2.819±0.00 4.320±1.23 4.193±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YF CIL_0001YF_0002 CGP 6:30047988-30304539

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001666 IEA response to hypoxia
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 TAS transcription factor complex
GO:0005737 IEA cytoplasm
GO:0007005 IMP mitochondrion organization
GO:0031100 IEA organ regeneration
GO:0032355 IEA response to estradiol
GO:0032496 IEA response to lipopolysaccharide
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051593 IEA response to folic acid
GO:0051602 IEA response to electrical stimulus
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223190 NRF1-001 protein_coding Homo_sapiens 0 1901
ENST00000311967 NRF1-002 protein_coding Homo_sapiens 0 1901
ENST00000318636 CA5B-005 protein_coding Homo_sapiens 0.00000000002 77
ENST00000353868 NRF1-201 protein_coding Homo_sapiens 0 1899
ENST00000393230 NRF1-003 protein_coding Homo_sapiens 0 1899
ENST00000393232 NRF1-202 protein_coding Homo_sapiens 0 1895
ENST00000454688 NRF1-005 protein_coding Homo_sapiens 0 891
ENST00000477428 NRF1-004 processed_transcript Homo_sapiens 9e-36 154
ENST00000502453 SUB1-005 retained_intron Homo_sapiens 0.00000000002 77

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