C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear respiratory factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115212 Nrf1-001 ENSMUSG00000058440 10090 + 6:30047988-30153458 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115212
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115212 5.581±1.92 5.216±0.75 1.996±0.03 4.678±3.04 5.831±2.35 6.256±1.92 1.753±0.26 4.351±0.81 3.807±2.50 7.323±1.31 0.614±0.14 7.056±3.48 2.747±0.38 2.469±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YF CIL_0001YF_0002 CGP 6:30047988-30304539

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007005 IMP mitochondrion organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223190 NRF1-001 protein_coding Homo_sapiens 0 2761
ENST00000311967 NRF1-002 protein_coding Homo_sapiens 0 1903
ENST00000318636 CA5B-005 protein_coding Homo_sapiens 0.00000000002 77
ENST00000353868 NRF1-201 protein_coding Homo_sapiens 0 1901
ENST00000393230 NRF1-003 protein_coding Homo_sapiens 0 2758
ENST00000393232 NRF1-202 protein_coding Homo_sapiens 0 2754
ENST00000454688 NRF1-005 protein_coding Homo_sapiens 0 887
ENST00000477428 NRF1-004 processed_transcript Homo_sapiens 2e-37 159
ENST00000502453 SUB1-005 retained_intron Homo_sapiens 0.00000000002 77

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