C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glypican 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078849 Gpc6-001 ENSMUSG00000058571 10090 + 14:116925297-117979529 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000078849
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000078849 3.469±0.61 1.919±0.60 13.079±1.56 2.854±1.64 3.898±1.33 1.340±0.16 1.747±0.65 1.892±0.37 1.143±1.00 0.903±0.36 3.859±2.55 1.094±0.52 0.160±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EC CIL_0002EC_0002 CGP 14:115092215-117979529
CIL_0000E8 CIL_0000E8_0002 CGP 14:116925297-118052246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005796 TAS Golgi lumen
GO:0005887 ISS integral component of plasma membrane
GO:0016477 ISS cell migration
GO:0031225 IEA anchored component of membrane
GO:0043395 IEA heparan sulfate proteoglycan binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377047 GPC6-001 protein_coding Homo_sapiens 0 2977
ENST00000617456 GPC6-201 protein_coding Homo_sapiens 0 976

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