C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein A3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059005 Hnrnpa3 10090 + 2:75659261-75669407 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090792 Hnrnpa3-201 75659318-75665286 protein_coding
  ENSMUST00000111961 Hnrnpa3-003 75659280-75666121 protein_coding
  ENSMUST00000111962 Hnrnpa3-001 75659267-75669407 protein_coding
  ENSMUST00000111964 Hnrnpa3-002 75659261-75665839 protein_coding
  ENSMUST00000132392 Hnrnpa3-005 75659280-75662033 retained_intron
  ENSMUST00000141974 Hnrnpa3-004 75662489-75665455 protein_coding
  ENSMUST00000164947 Hnrnpa3-202 75659318-75665286 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090792ENSMUST00000111961ENSMUST00000111962ENSMUST00000111964ENSMUST00000132392ENSMUST00000141974ENSMUST00000164947
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090792 N/A 5.242±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 14.330±2.38 12.451±2.17 N/A N/A
ENSMUST00000111961 N/A N/A N/A 15.545±0.00 N/A N/A N/A N/A 52.690±8.43 N/A 7.658±1.56 48.538±17.56 70.245±50.56 25.850±0.00
ENSMUST00000111962 16.476±6.44 9.268±1.92 42.934±5.17 55.002±31.78 13.689±1.38 8.815±1.67 10.655±0.31 14.315±1.94 33.074±22.91 25.678±2.00 10.506±0.89 16.376±10.26 23.170±11.97 5.350±1.78
ENSMUST00000111964 N/A N/A N/A 66.598±0.00 N/A N/A N/A N/A 107.274±48.50 N/A 7.260±0.00 8.310±0.00 49.836±0.00 49.046±50.87
ENSMUST00000132392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.752±0.00 N/A N/A
ENSMUST00000141974 N/A N/A N/A 95.327±0.00 N/A N/A N/A N/A N/A N/A N/A 451.437±0.00 389.818±230.44 857.296±0.00
ENSMUST00000164947 N/A 5.199±0.46 68.893±5.54 119.825±0.00 N/A 7.211±0.00 N/A 17.901±0.73 116.094±110.85 19.262±0.00 16.089±3.21 67.252±65.38 180.580±56.96 22.198±2.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00017S CIL_00017S_0002 CGP 2:74825803-75669407
CIL_00017P CIL_00017P_0002 CGP 2:75659261-75704641

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059351 hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 protein_coding Danio_rerio
ENSG00000170144 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 protein_coding Homo_sapiens

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