C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111962 Hnrnpa3-001 ENSMUSG00000059005 10090 + 2:75659267-75669407 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111962
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111962 16.476±6.44 9.268±1.92 42.934±5.17 55.002±31.78 13.689±1.38 8.815±1.67 10.655±0.31 14.315±1.94 33.074±22.91 25.678±2.00 10.506±0.89 16.376±10.26 23.170±11.97 5.350±1.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00017S CIL_00017S_0002 CGP 2:74825803-75669407
CIL_00017P CIL_00017P_0002 CGP 2:75659261-75704641

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392524 HNRNPA3-001 protein_coding Homo_sapiens 0 2798
ENST00000401429 HNRNPA3P1-001 processed_pseudogene Homo_sapiens 0 1519
ENST00000411529 HNRNPA3-002 protein_coding Homo_sapiens 0 3088
ENST00000416838 HNRNPA3P3-001 processed_pseudogene Homo_sapiens 0 1495
ENST00000424470 HNRNPA3P15-001 processed_pseudogene Homo_sapiens 0 1096
ENST00000424736 RP11-512F24.1-001 processed_pseudogene Homo_sapiens 0 992
ENST00000427514 HNRNPA3P4-001 processed_pseudogene Homo_sapiens 0 987
ENST00000432457 HNRNPA3-008 protein_coding Homo_sapiens 0 795
ENST00000435711 HNRNPA3-014 protein_coding Homo_sapiens 0 1663
ENST00000437410 HNRNPA3P12-001 processed_pseudogene Homo_sapiens 0 1426
ENST00000441511 AC012513.4-001 processed_pseudogene Homo_sapiens 0 1046
ENST00000444546 HNRNPA3P14-001 processed_pseudogene Homo_sapiens 0 717
ENST00000451198 HNRNPA3P2-001 unprocessed_pseudogene Homo_sapiens 0 462
ENST00000455201 HNRNPA3P5-001 processed_pseudogene Homo_sapiens 0 1227
ENST00000472163 HNRNPA3P6-001 processed_pseudogene Homo_sapiens 0 979
ENST00000483137 HNRNPA3-012 retained_intron Homo_sapiens 0 739
ENST00000507583 RP11-395I6.1-001 processed_pseudogene Homo_sapiens 4e-24 113
ENST00000512222 HNRNPA3P13-001 processed_pseudogene Homo_sapiens 0 1279
ENST00000547726 HNRNPA3P10-001 processed_pseudogene Homo_sapiens 0 1493
ENST00000564298 HNRNPA3P11-001 processed_pseudogene Homo_sapiens 0 1024
ENST00000591842 HNRNPA3P16-001 processed_pseudogene Homo_sapiens 0 778
ENST00000604913 HNRNPA3P9-001 processed_pseudogene Homo_sapiens 0 736
ENST00000619693 CTD-3093M3.1-001 unprocessed_pseudogene Homo_sapiens 7e-24 111

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