C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00017S_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128654-ENSG00000170144 CGP 9606 2:176269395-177223958
GeneTranscriptPositionBiotype
ENSG00000128654 (MTX2)
metaxin 2 		ENST00000249442 (MTX2-001) 176269419-176338025 protein_coding
ENST00000420864 (MTX2-002) 176269395-176338025 nonsense_mediated_decay
ENST00000423461 (MTX2-008) 176269452-176328322 nonsense_mediated_decay
ENST00000443241 (MTX2-004) 176269470-176337679 protein_coding
ENST00000452865 (MTX2-007) 176269502-176337630 protein_coding
ENSG00000163364 (LINC01116)
long intergenic non-protein coding RNA 1116 		ENST00000295549 (LINC01116-001) 176629589-176637931 lincRNA
ENST00000339037 (LINC01116-002) 176630165-176637562 lincRNA
ENSG00000170144 (HNRNPA3)
heterogeneous nuclear ribonucleoprotein A3 		ENST00000392524 (HNRNPA3-001) 177212563-177220085 protein_coding
ENST00000411529 (HNRNPA3-002) 177212749-177223958 protein_coding
ENST00000432457 (HNRNPA3-008) 177216526-177219687 protein_coding
ENST00000435711 (HNRNPA3-014) 177212772-177219865 protein_coding
ENST00000483137 (HNRNPA3-012) 177219093-177219806 retained_intron
ENSG00000201102 (Y_RNA)
Y RNA 		ENST00000364232 (Y_RNA.1-420) 177194983-177195095 misc_RNA
ENSG00000213069 (KRT8P40)
keratin 8 pseudogene 40 		ENST00000392131 (KRT8P40-001) 177197985-177198547 processed_pseudogene
ENSG00000223777 (AC092162.2)
 ENST00000432828 (AC092162.2-001) 176809426-176809859 processed_pseudogene
ENSG00000224577 (LINC01117)
long intergenic non-protein coding RNA 1117 		ENST00000443670 (LINC01117-001) 176637710-176655958 lincRNA
ENSG00000226273 (AC079305.5)
 ENST00000416154 (AC079305.5-001) 177177695-177178255 processed_pseudogene
ENSG00000227098 (AC073636.1)
 ENST00000432925 (AC073636.1-001) 176845993-176849428 lincRNA
ENST00000457756 (AC073636.1-002) 176846056-176849403 lincRNA
ENSG00000229434 (AC017048.1)
 ENST00000412153 (AC017048.1-001) 176506245-176507702 lincRNA
ENSG00000230552 (AC092162.1)
 ENST00000428283 (AC092162.1-004) 176753400-176819250 retained_intron
ENST00000430460 (AC092162.1-002) 176761237-176762616 lincRNA
ENST00000438143 (AC092162.1-001) 176724268-176766111 lincRNA
ENST00000451851 (AC092162.1-003) 176761408-176819310 lincRNA
ENSG00000236231 (AC017048.2)
 ENST00000431455 (AC017048.2-001) 176524879-176531683 lincRNA
ENSG00000236501 (AC079305.11)
 ENST00000441205 (AC079305.11-001) 176990842-177164516 lincRNA
ENST00000452002 (AC079305.11-002) 176990508-177056316 lincRNA
ENSG00000237053 (FUCA1P1)
fucosidase, alpha-L- 1, tissue pseudogene 1 		ENST00000374476 (FUCA1P1-001) 176804987-176806337 processed_pseudogene
ENSG00000237260 (AC073069.2)
 ENST00000428657 (AC073069.2-001) 176338637-176339077 processed_pseudogene
ENSG00000265186 (AC068706.2)
 ENST00000579655 (AC068706.2-201) 176382232-176382332 miRNA
ENSG00000272551 (RP11-324L17.1)
 ENST00000608775 (RP11-324L17.1-001) 176611437-176612249 lincRNA
ENSG00000279205 (RP11-632P5.1)
 ENST00000624511 (RP11-632P5.1-001) 176822030-176823653 TEC
CIL_00017S_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027099-ENSMUSG00000059005 CGP 10090 2:74825803-75669407
GeneTranscriptPositionBiotype
ENSMUSG00000027099 (Mtx2)
metaxin 2 		ENSMUST00000028511 (Mtx2-001) 74825803-74878431 protein_coding
ENSMUST00000129284 (Mtx2-003) 74868981-74876504 retained_intron
ENSMUST00000155844 (Mtx2-002) 74825830-74868814 retained_intron
ENSMUSG00000059005 (Hnrnpa3)
heterogeneous nuclear ribonucleoprotein A3 		ENSMUST00000090792 (Hnrnpa3-201) 75659318-75665286 protein_coding
ENSMUST00000111961 (Hnrnpa3-003) 75659280-75666121 protein_coding
ENSMUST00000111962 (Hnrnpa3-001) 75659267-75669407 protein_coding
ENSMUST00000111964 (Hnrnpa3-002) 75659261-75665839 protein_coding
ENSMUST00000132392 (Hnrnpa3-005) 75659280-75662033 retained_intron
ENSMUST00000141974 (Hnrnpa3-004) 75662489-75665455 protein_coding
ENSMUST00000164947 (Hnrnpa3-202) 75659318-75665286 protein_coding
ENSMUSG00000075276 (Gm13653)
predicted gene 13653 		ENSMUST00000122260 (Gm13653-001) 75192277-75192759 processed_pseudogene
ENSMUSG00000081156 (Gm14425)
predicted gene 14425 		ENSMUST00000121240 (Gm14425-001) 74855706-74856311 transcribed_processed_pseudogene
ENSMUSG00000081406 (Rps6-ps4)
ribosomal protein S6, pseudogene 4 		ENSMUST00000118499 (Rps6-ps4-001) 75191073-75191822 processed_pseudogene
ENSMUSG00000082152 (Gm13655)
predicted gene 13655 		ENSMUST00000119695 (Gm13655-001) 75632638-75633382 processed_pseudogene
ENSMUSG00000083837 (Gm14427)
predicted gene 14427 		ENSMUST00000117183 (Gm14427-001) 74886372-74887006 processed_pseudogene
ENSMUSG00000086044 (A330043C09Rik)
RIKEN cDNA A330043C09 gene 		ENSMUST00000139823 (A330043C09Rik-001) 75147118-75177658 lincRNA
ENSMUSG00000086576 (Gm13660)
predicted gene 13660 		ENSMUST00000142828 (Gm13660-001) 75458966-75464788 lincRNA
ENSMUSG00000087333 (Gm13652)
predicted gene 13652 		ENSMUST00000143898 (Gm13652-001) 75124871-75137798 lincRNA
ENSMUSG00000100303 (RP23-180A8.3)
RIKEN cDNA 2600014E21 gene 		ENSMUST00000186411 (RP23-180A8.3-001) 75138842-75322897 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00017S_0001ENSG00000128654ENST00000249442ENST00000420864ENST00000423461ENST00000443241ENST00000452865ENSG00000163364ENST00000295549ENST00000339037ENSG00000170144ENST00000392524ENST00000411529ENST00000432457ENST00000435711ENST00000483137ENSG00000201102ENST00000364232ENSG00000213069ENST00000392131ENSG00000223777ENST00000432828ENSG00000224577ENST00000443670ENSG00000226273ENST00000416154ENSG00000227098ENST00000432925ENST00000457756ENSG00000229434ENST00000412153ENSG00000230552ENST00000428283ENST00000430460ENST00000438143ENST00000451851ENSG00000236231ENST00000431455ENSG00000236501ENST00000441205ENST00000452002ENSG00000237053ENST00000374476ENSG00000237260ENST00000428657ENSG00000265186ENST00000579655ENSG00000272551ENST00000608775ENSG00000279205ENST00000624511CIL_00017S_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00017S_0001ENSG00000128654ENST00000249442ENST00000420864ENST00000443241ENST00000452865ENSG00000163364ENST00000295549ENST00000339037ENSG00000170144ENST00000392524ENST00000411529ENST00000432457ENST00000435711ENSG00000201102ENST00000364232ENSG00000213069ENST00000392131ENSG00000223777ENST00000432828ENSG00000224577ENST00000443670ENSG00000226273ENST00000416154ENSG00000227098ENST00000432925ENST00000457756ENSG00000229434ENST00000412153ENSG00000230552ENST00000428283ENST00000430460ENST00000438143ENST00000451851ENSG00000236231ENST00000431455ENSG00000236501ENST00000441205ENST00000452002ENSG00000237053ENST00000374476ENSG00000237260ENST00000428657ENSG00000265186ENST00000579655ENSG00000272551ENST00000608775ENSG00000279205ENST00000624511CIL_00017S_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128654 ENST00000249442 3.028±0.00 1.230±0.00 1.078±0.00 4.894±0.94 2.689±0.52 4.093±0.00 2.657±1.58 8.293±0.00 1.462±0.14 N/A 1.442±0.16 10.027±5.53 8.304±0.84 22.440±7.22
ENST00000420864 0.661±0.00 1.317±0.00 1.095±0.00 1.405±0.00 1.389±0.00 N/A 0.606±0.00 N/A N/A N/A N/A 2.557±1.59 N/A N/A
ENST00000423461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443241 4.943±0.00 9.817±0.00 2.073±0.00 12.885±1.21 6.974±3.41 7.888±0.00 10.577±7.77 13.212±10.33 4.409±1.53 6.423±0.00 6.331±1.75 15.487±12.18 11.424±2.50 36.939±13.55
ENST00000452865 N/A N/A N/A N/A N/A N/A 6.663±0.00 N/A 2.007±0.00 1.577±0.00 3.139±0.00 N/A N/A N/A
ENSG00000163364 ENST00000295549 1.203±0.00 2.907±0.00 0.933±0.00 0.177±0.05 1.156±0.75 1.686±1.29 0.114±0.07 4.379±0.00 0.254±0.21 0.428±0.00 0.131±0.00 3.704±2.87 0.755±0.41 5.235±3.32
ENST00000339037 0.617±0.00 1.472±0.00 N/A 0.047±0.00 0.782±0.00 N/A 0.040±0.00 2.131±0.00 N/A 0.042±0.00 N/A N/A 0.117±0.00 N/A
ENSG00000170144 ENST00000392524 22.445±0.00 24.017±0.00 N/A N/A 10.531±0.00 20.854±0.00 5.891±0.00 22.156±0.00 6.501±0.00 16.863±0.00 8.753±0.00 36.193±8.73 44.346±13.57 49.961±18.18
ENST00000411529 17.455±0.00 29.113±0.00 N/A 14.854±8.54 12.780±1.54 16.477±4.85 3.749±3.08 11.712±6.46 7.914±0.74 15.732±10.03 4.278±2.12 19.565±10.00 11.094±1.16 13.409±4.81
ENST00000432457 82.380±0.00 118.707±0.00 N/A 88.167±0.00 52.458±0.00 92.659±0.00 19.360±0.00 79.935±0.00 22.794±0.00 73.367±0.00 24.904±0.00 115.577±34.41 82.569±32.29 147.566±0.93
ENST00000435711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.798±0.00 N/A
ENST00000483137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201102 ENST00000364232 N/A N/A N/A 0.367±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213069 ENST00000392131 N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A 0.115±0.00 N/A N/A
ENSG00000223777 ENST00000432828 0.179±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224577 ENST00000443670 0.454±0.00 N/A N/A 0.069±0.00 0.425±0.00 N/A N/A N/A N/A N/A 0.124±0.00 N/A 0.267±0.00 0.587±0.00
ENSG00000226273 ENST00000416154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.151±0.00
ENSG00000227098 ENST00000432925 0.039±0.00 0.010±0.00 N/A 0.039±0.00 0.168±0.00 N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A 2.394±1.72
ENST00000457756 N/A 0.010±0.00 N/A 0.120±0.08 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 2.128±0.00
ENSG00000229434 ENST00000412153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.368±0.11
ENSG00000230552 ENST00000428283 0.005±0.00 0.032±0.00 N/A N/A 0.006±0.00 0.033±0.02 0.015±0.01 0.004±0.00 0.052±0.00 N/A N/A 0.005±0.00 N/A 0.074±0.00
ENST00000430460 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A 0.167±0.00
ENST00000438143 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451851 N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.00
ENSG00000236231 ENST00000431455 N/A N/A N/A N/A 0.237±0.00 0.268±0.00 0.023±0.00 N/A 0.499±0.00 N/A N/A N/A N/A N/A
ENSG00000236501 ENST00000441205 N/A N/A N/A 0.244±0.15 N/A 0.116±0.00 0.023±0.00 0.025±0.00 N/A N/A N/A 0.065±0.00 N/A 0.159±0.09
ENST00000452002 N/A N/A N/A N/A N/A N/A N/A N/A 0.235±0.00 0.113±0.00 N/A 0.233±0.17 0.120±0.00 0.132±0.00
ENSG00000237053 ENST00000374476 N/A 0.095±0.00 0.153±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A 0.014±0.01
ENSG00000237260 ENST00000428657 N/A N/A 2.086±0.00 1.078±0.98 N/A N/A 0.086±0.00 0.308±0.00 0.179±0.00 0.831±0.00 N/A 0.220±0.14 0.142±0.00 0.316±0.00
ENSG00000265186 ENST00000579655 N/A 0.268±0.00 N/A N/A 0.567±0.00 N/A N/A 0.558±0.00 N/A N/A N/A 18.868±0.00 N/A 0.246±0.00
ENSG00000272551 ENST00000608775 N/A 0.396±0.00 N/A 0.316±0.18 0.114±0.00 0.103±0.06 N/A 0.345±0.00 N/A N/A 0.171±0.00 0.242±0.22 0.048±0.00 0.566±0.08
ENSG00000279205 ENST00000624511 0.303±0.00 0.275±0.00 N/A 0.014±0.00 0.121±0.02 0.120±0.00 0.012±0.00 0.116±0.00 N/A N/A N/A 0.152±0.12 0.050±0.00 0.281±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027099 ENSMUST00000028511 4.135±1.07 N/A 3.216±0.63 3.281±1.01 2.954±0.64 2.966±0.85 3.790±1.60 3.462±0.48 3.223±1.50 1.359±0.00 3.142±0.63 4.527±1.21 3.751±1.02 2.071±0.77
ENSMUST00000129284 13.781±1.64 N/A 9.546±0.05 13.609±4.47 9.168±1.63 N/A 20.740±1.59 16.748±1.39 12.443±2.53 N/A 4.034±0.63 16.034±4.93 17.159±7.74 9.134±1.64
ENSMUST00000155844 34.800±19.23 217.135±34.10 10.934±0.00 N/A 50.690±14.69 73.859±13.44 29.465±15.54 40.059±12.95 21.428±11.52 36.312±16.89 N/A 70.639±45.96 5.766±0.06 9.755±9.13
ENSMUSG00000059005 ENSMUST00000090792 N/A 5.242±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 14.330±2.38 12.451±2.17 N/A N/A
ENSMUST00000111961 N/A N/A N/A 15.545±0.00 N/A N/A N/A N/A 52.690±8.43 N/A 7.658±1.56 48.538±17.56 70.245±50.56 25.850±0.00
ENSMUST00000111962 16.476±6.44 9.268±1.92 42.934±5.17 55.002±31.78 13.689±1.38 8.815±1.67 10.655±0.31 14.315±1.94 33.074±22.91 25.678±2.00 10.506±0.89 16.376±10.26 23.170±11.97 5.350±1.78
ENSMUST00000111964 N/A N/A N/A 66.598±0.00 N/A N/A N/A N/A 107.274±48.50 N/A 7.260±0.00 8.310±0.00 49.836±0.00 49.046±50.87
ENSMUST00000132392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.752±0.00 N/A N/A
ENSMUST00000141974 N/A N/A N/A 95.327±0.00 N/A N/A N/A N/A N/A N/A N/A 451.437±0.00 389.818±230.44 857.296±0.00
ENSMUST00000164947 N/A 5.199±0.46 68.893±5.54 119.825±0.00 N/A 7.211±0.00 N/A 17.901±0.73 116.094±110.85 19.262±0.00 16.089±3.21 67.252±65.38 180.580±56.96 22.198±2.92
ENSMUSG00000075276 ENSMUST00000122260 0.122±0.00 N/A 0.135±0.01 0.165±0.00 N/A N/A N/A N/A 0.396±0.31 0.135±0.00 0.099±0.00 0.197±0.08 0.175±0.05 N/A
ENSMUSG00000081156 ENSMUST00000121240 0.112±0.06 0.194±0.00 0.058±0.04 0.171±0.03 0.329±0.20 0.485±0.09 0.139±0.00 0.165±0.11 0.070±0.04 0.223±0.05 0.078±0.00 0.368±0.40 0.038±0.01 0.183±0.09
ENSMUSG00000081406 ENSMUST00000118499 7.973±2.11 0.639±0.18 13.290±9.87 24.582±14.66 5.200±1.81 2.913±0.88 3.177±0.18 4.293±1.28 35.587±52.67 2.984±1.32 2.619±0.88 6.700±4.05 2.993±2.02 3.061±0.46
ENSMUSG00000082152 ENSMUST00000119695 N/A N/A 0.185±0.00 0.012±0.00 N/A 0.377±0.16 N/A 1.988±0.66 0.034±0.02 1.037±0.41 N/A 0.231±0.07 0.203±0.13 N/A
ENSMUSG00000083837 ENSMUST00000117183 0.080±0.01 0.304±0.09 0.079±0.06 0.133±0.00 0.634±0.24 N/A 0.119±0.06 0.166±0.09 0.085±0.06 0.165±0.08 N/A 0.395±0.05 0.030±0.00 0.065±0.00
ENSMUSG00000086044 ENSMUST00000139823 N/A 0.083±0.00 0.025±0.01 0.038±0.02 N/A N/A 0.032±0.00 N/A 0.025±0.01 N/A N/A 0.202±0.17 0.011±0.00 0.225±0.11
ENSMUSG00000086576 ENSMUST00000142828 N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A 0.015±0.00 0.105±0.00 N/A 0.102±0.00 0.013±0.00 N/A
ENSMUSG00000087333 ENSMUST00000143898 0.196±0.17 0.130±0.04 0.083±0.03 0.036±0.00 0.286±0.09 0.089±0.05 0.034±0.02 0.899±0.78 0.019±0.02 0.019±0.01 0.021±0.00 0.157±0.09 0.014±0.00 0.162±0.18
ENSMUSG00000100303 ENSMUST00000186411 0.379±0.39 0.441±0.12 0.020±0.00 N/A 0.060±0.02 0.044±0.01 0.007±0.00 0.019±0.01 0.007±0.00 0.014±0.01 0.005±0.00 0.126±0.05 0.016±0.01 0.074±0.07

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