C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114385 Hnrnpm-003 ENSMUSG00000059208 10090 - 17:33646235-33685392 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartMuscleOvaryPlacentaENSMUST00000114385
Transcript ID Bladder Brain Heart Muscle Ovary Placenta
ENSMUST00000114385 13.197±0.00 25.366±0.29 8.428±0.00 11.605±0.72 32.503±8.83 22.433±12.49

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325495 HNRNPM-002 protein_coding Homo_sapiens 0 2955
ENST00000348943 HNRNPM-001 protein_coding Homo_sapiens 0 1986
ENST00000560685 HNRNPMP1-001 processed_pseudogene Homo_sapiens 7e-32 143
ENST00000593293 HNRNPM-014 retained_intron Homo_sapiens 0 342
ENST00000594907 HNRNPM-017 protein_coding Homo_sapiens 0 1426
ENST00000596295 HNRNPM-012 protein_coding Homo_sapiens 0 787
ENST00000596369 HNRNPMP2-001 processed_pseudogene Homo_sapiens 0 191
ENST00000596984 HNRNPM-010 protein_coding Homo_sapiens 0 436
ENST00000597081 HNRNPM-016 processed_transcript Homo_sapiens 0 1236
ENST00000597270 HNRNPM-007 protein_coding Homo_sapiens 0 896
ENST00000597813 HNRNPM-013 retained_intron Homo_sapiens 0 449
ENST00000598367 HNRNPM-008 protein_coding Homo_sapiens 0 318
ENST00000598603 HNRNPM-011 retained_intron Homo_sapiens 0 243
ENST00000598999 HNRNPM-015 protein_coding Homo_sapiens 0 392
ENST00000600092 HNRNPM-003 protein_coding Homo_sapiens 0 771
ENST00000600806 HNRNPM-004 nonsense_mediated_decay Homo_sapiens 0 1341
ENST00000601645 HNRNPM-009 protein_coding Homo_sapiens 0 754
ENST00000602219 HNRNPM-006 processed_transcript Homo_sapiens 0 732
ENST00000620401 HNRNPM-201 protein_coding Homo_sapiens 0 2931
ENST00000621170 CTB-147N14.7-001 processed_pseudogene Homo_sapiens 0 191

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