C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel and clathrin linker 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059834 Sclt1 10090 - 3:41626717-41742514 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026866 Sclt1-001 41626717-41742514 protein_coding
  ENSMUST00000138691 Sclt1-008 41629402-41657356 protein_coding
  ENSMUST00000140373 Sclt1-006 41657224-41673275 retained_intron
  ENSMUST00000142908 Sclt1-009 41627117-41630123 retained_intron
  ENSMUST00000146125 Sclt1-004 41626942-41742028 nonsense_mediated_decay
  ENSMUST00000148769 Sclt1-002 41626942-41742481 nonsense_mediated_decay
  ENSMUST00000154773 Sclt1-007 41657226-41664003 nonsense_mediated_decay
  ENSMUST00000156279 Sclt1-005 41673782-41717796 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026866ENSMUST00000140373ENSMUST00000146125ENSMUST00000148769ENSMUST00000156279
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026866 0.180±0.00 1.631±0.11 3.374±0.82 1.575±0.00 2.352±1.07 0.426±0.00 1.066±0.00 1.681±0.95 2.113±0.00 0.604±0.18 2.555±1.42 1.697±0.67 8.402±3.29
ENSMUST00000140373 0.267±0.09 N/A 1.309±0.16 0.384±0.00 0.823±0.00 0.303±0.08 0.603±0.31 0.275±0.00 0.721±0.20 0.297±0.06 2.156±1.01 N/A N/A
ENSMUST00000146125 N/A N/A 2.534±0.00 N/A N/A N/A N/A N/A N/A 0.452±0.00 2.459±1.62 2.049±1.03 42.539±0.00
ENSMUST00000148769 0.454±0.33 N/A 3.142±0.00 0.683±0.00 N/A 0.285±0.07 0.492±0.00 0.320±0.13 N/A 0.447±0.20 7.169±0.00 2.562±1.64 34.092±52.43
ENSMUST00000156279 N/A N/A 1.053±0.00 N/A N/A N/A N/A N/A N/A N/A 1.493±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001M CIL_00001M_0002 CGP 3:41555734-41742514
CIL_0006YI CIL_0006YI_0003 CGP 3:41626717-41759389

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005814 ISS centriole
GO:0008022 IEA protein C-terminus binding
GO:0015630 IEA microtubule cytoskeleton
GO:0017080 IEA sodium channel regulator activity
GO:0030276 IEA clathrin binding
GO:0042384 ISS cilium assembly
GO:0045162 IEA clustering of voltage-gated sodium channels
GO:0070062 IEA extracellular vesicular exosome
GO:0071439 IEA clathrin complex
GO:0097539 IEA ciliary transition fiber

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057248 sclt1 sodium channel and clathrin linker 1 protein_coding Danio_rerio
ENSG00000151466 SCLT1 sodium channel and clathrin linker 1 protein_coding Homo_sapiens

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