C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel and clathrin linker 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148769 Sclt1-002 ENSMUSG00000059834 10090 - 3:41626942-41742481 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000148769
Transcript ID Adipose Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000148769 0.454±0.33 3.142±0.00 0.683±0.00 0.285±0.07 0.492±0.00 0.320±0.13 0.447±0.20 7.169±0.00 2.562±1.64 34.092±52.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001M CIL_00001M_0002 CGP 3:41555734-41742514
CIL_0006YI CIL_0006YI_0003 CGP 3:41626717-41759389

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005814 ISS centriole
GO:0042384 ISS cilium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281142 SCLT1-001 protein_coding Homo_sapiens 0 2047
ENST00000439369 SCLT1-004 protein_coding Homo_sapiens 0 462
ENST00000502495 SCLT1-007 processed_transcript Homo_sapiens 0 1046
ENST00000503215 SCLT1-005 protein_coding Homo_sapiens 0 460
ENST00000503565 SCLT1-009 processed_transcript Homo_sapiens 0 322
ENST00000506233 SCLT1-006 retained_intron Homo_sapiens 0 1339

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