C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006YI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000057248-ENSDARG00000017985 CGP 7955 1:11660587-11694017
GeneTranscriptPositionBiotype
ENSDARG00000017985 (C1H4orf33)
chromosome 4 open reading frame 33 		ENSDART00000008127 (C1H4orf33-005) 11690610-11694017 protein_coding
ENSDART00000134575 (C1H4orf33-002) 11690340-11691418 processed_transcript
ENSDART00000136421 (C1H4orf33-003) 11690395-11693431 protein_coding
ENSDART00000138622 (C1H4orf33-001) 11690336-11693911 protein_coding
ENSDART00000139440 (C1H4orf33-004) 11690426-11693483 protein_coding
ENSDARG00000057248 (sclt1)
sodium channel and clathrin linker 1 		ENSDART00000079782 (sclt1-201) 11660920-11689183 protein_coding
ENSDART00000134708 (sclt1-003) 11680407-11690232 protein_coding
ENSDART00000144596 (sclt1-002) 11684334-11693389 protein_coding
ENSDART00000146067 (sclt1-001) 11660587-11690179 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006YI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000151466-ENSG00000151470 CGP 9606 4:128864921-129116640
GeneTranscriptPositionBiotype
ENSG00000077684 (JADE1)
jade family PHD finger 1 		ENST00000226319 (JADE1-201) 128809623-128875224 protein_coding
ENST00000413543 (JADE1-001) 128811326-128864630 protein_coding
ENST00000452328 (JADE1-003) 128809815-128875224 protein_coding
ENST00000503785 (JADE1-007) 128809920-128849072 protein_coding
ENST00000504089 (JADE1-005) 128809844-128849093 protein_coding
ENST00000507833 (JADE1-009) 128811844-128849078 protein_coding
ENST00000508997 (JADE1-010) 128831433-128849040 protein_coding
ENST00000510308 (JADE1-006) 128811288-128849112 protein_coding
ENST00000511647 (JADE1-002) 128809703-128864081 protein_coding
ENST00000511925 (JADE1-011) 128811292-128852128 nonsense_mediated_decay
ENST00000512960 (JADE1-004) 128809919-128872334 protein_coding
ENST00000514740 (JADE1-008) 128810031-128831811 protein_coding
ENST00000610919 (JADE1-202) 128811270-128875224 protein_coding
ENST00000611140 (JADE1-203) 128811844-128875224 protein_coding
ENSG00000151466 (SCLT1)
sodium channel and clathrin linker 1 		ENST00000281142 (SCLT1-001) 128883993-129093607 protein_coding
ENST00000439369 (SCLT1-004) 128884346-129093410 protein_coding
ENST00000502495 (SCLT1-007) 128884390-128997285 processed_transcript
ENST00000503215 (SCLT1-005) 128884346-129093412 protein_coding
ENST00000503401 (SCLT1-002) 129039230-129093563 protein_coding
ENST00000503565 (SCLT1-009) 128864921-128936704 processed_transcript
ENST00000506233 (SCLT1-006) 128883997-128972372 retained_intron
ENST00000506368 (SCLT1-008) 129036595-129093377 protein_coding
ENST00000511426 (SCLT1-003) 129039193-129093545 protein_coding
ENSG00000275647 (RP11-209D20.2)
 ENST00000612976 (RP11-209D20.2-001) 128944628-128944956 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0006YI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059834-ENSMUSG00000025766 CGP 10090 3:41626717-41759389
GeneTranscriptPositionBiotype
ENSMUSG00000059834 (Sclt1)
sodium channel and clathrin linker 1 		ENSMUST00000026866 (Sclt1-001) 41626717-41742514 protein_coding
ENSMUST00000138691 (Sclt1-008) 41629402-41657356 protein_coding
ENSMUST00000140373 (Sclt1-006) 41657224-41673275 retained_intron
ENSMUST00000142908 (Sclt1-009) 41627117-41630123 retained_intron
ENSMUST00000146125 (Sclt1-004) 41626942-41742028 nonsense_mediated_decay
ENSMUST00000148769 (Sclt1-002) 41626942-41742481 nonsense_mediated_decay
ENSMUST00000154773 (Sclt1-007) 41657226-41664003 nonsense_mediated_decay
ENSMUST00000156279 (Sclt1-005) 41673782-41717796 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006YI_0001ENSDARG00000017985ENSDART00000008127ENSDART00000134575ENSDART00000136421ENSDART00000138622ENSDART00000139440ENSDARG00000057248ENSDART00000079782ENSDART00000134708ENSDART00000144596ENSDART00000146067CIL_0006YI_0002ENSG00000077684ENST00000226319ENST00000413543ENST00000452328ENST00000503785ENST00000504089ENST00000507833ENST00000508997ENST00000510308ENST00000511647ENST00000511925ENST00000512960ENST00000514740ENST00000610919ENST00000611140ENSG00000151466ENST00000281142ENST00000439369ENST00000502495ENST00000503215ENST00000503401ENST00000503565ENST00000506233ENST00000506368ENST00000511426ENSG00000275647ENST00000612976CIL_0006YI_0003ENSMUSG00000059834ENSMUST00000026866ENSMUST00000138691ENSMUST00000140373ENSMUST00000142908ENSMUST00000146125ENSMUST00000148769ENSMUST00000154773ENSMUST00000156279
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006YI_0001ENSDARG00000017985ENSDART00000008127ENSDART00000138622ENSDARG00000057248ENSDART00000079782ENSDART00000146067CIL_0006YI_0002ENSG00000077684ENST00000226319ENST00000452328ENST00000511647ENST00000512960ENST00000610919ENST00000611140ENSG00000151466ENST00000281142ENST00000503215ENSG00000275647ENST00000612976CIL_0006YI_0003ENSMUSG00000059834ENSMUST00000026866ENSMUST00000140373ENSMUST00000146125ENSMUST00000148769ENSMUST00000156279
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017985 ENSDART00000008127 N/A N/A N/A N/A N/A N/A 8.629±0.62 38.089±9.99 0.445±0.00 N/A N/A N/A N/A N/A
ENSDART00000134575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138622 N/A N/A N/A 2.356±0.00 N/A N/A 5.374±2.28 9.566±0.00 N/A N/A 1.534±0.00 N/A N/A N/A
ENSDART00000139440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000057248 ENSDART00000079782 N/A N/A N/A 2.960±0.00 N/A N/A 1.916±0.00 N/A 0.189±0.00 N/A N/A N/A N/A N/A
ENSDART00000134708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000144596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146067 N/A N/A N/A 0.657±0.22 N/A N/A 1.049±0.00 4.735±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000077684 ENST00000226319 N/A N/A 1.102±0.00 N/A 2.548±0.00 N/A N/A N/A 4.060±0.00 N/A N/A 1.184±0.00 N/A N/A
ENST00000413543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452328 N/A 6.733±0.00 N/A N/A 10.125±0.00 N/A 1.210±0.72 1.733±0.00 1.602±0.00 N/A 1.554±1.15 2.951±0.00 4.106±0.00 2.188±0.13
ENST00000503785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511647 N/A N/A 1.709±0.00 4.428±0.00 N/A 3.002±0.00 N/A N/A N/A 5.500±1.47 N/A 5.264±2.46 4.382±1.61 5.358±0.57
ENST00000511925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512960 N/A N/A 2.005±0.00 N/A N/A N/A 0.849±0.00 N/A 6.056±0.00 N/A 1.639±0.00 2.302±0.00 N/A N/A
ENST00000514740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610919 17.632±0.00 N/A N/A N/A 5.805±0.00 10.169±0.00 2.345±0.00 N/A N/A N/A N/A 6.842±0.00 1.902±0.00 3.353±0.00
ENST00000611140 N/A 5.753±0.00 N/A N/A N/A 10.774±0.00 2.105±1.47 13.977±0.00 0.689±0.00 5.399±0.59 1.617±0.00 N/A N/A 3.019±0.00
ENSG00000151466 ENST00000281142 N/A N/A N/A N/A 2.005±0.00 2.188±0.00 N/A N/A 2.670±0.00 2.887±0.00 N/A 2.578±0.51 2.627±0.00 3.856±0.00
ENST00000439369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503215 N/A N/A N/A N/A 4.773±0.00 N/A 1.197±0.00 N/A N/A N/A 1.032±0.00 N/A N/A N/A
ENST00000503401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000275647 ENST00000612976 N/A 0.099±0.00 N/A N/A N/A N/A N/A N/A N/A 2.813±0.00 N/A 0.054±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000059834 ENSMUST00000026866 0.180±0.00 N/A 1.631±0.11 3.374±0.82 1.575±0.00 2.352±1.07 0.426±0.00 1.066±0.00 1.681±0.95 2.113±0.00 0.604±0.18 2.555±1.42 1.697±0.67 8.402±3.29
ENSMUST00000138691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140373 0.267±0.09 N/A N/A 1.309±0.16 0.384±0.00 0.823±0.00 0.303±0.08 0.603±0.31 0.275±0.00 0.721±0.20 0.297±0.06 2.156±1.01 N/A N/A
ENSMUST00000142908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146125 N/A N/A N/A 2.534±0.00 N/A N/A N/A N/A N/A N/A 0.452±0.00 2.459±1.62 2.049±1.03 42.539±0.00
ENSMUST00000148769 0.454±0.33 N/A N/A 3.142±0.00 0.683±0.00 N/A 0.285±0.07 0.492±0.00 0.320±0.13 N/A 0.447±0.20 7.169±0.00 2.562±1.64 34.092±52.43
ENSMUST00000154773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156279 N/A N/A N/A 1.053±0.00 N/A N/A N/A N/A N/A N/A N/A 1.493±0.00 N/A N/A

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