C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel and clathrin linker 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026866 Sclt1-001 ENSMUSG00000059834 10090 - 3:41626717-41742514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026866
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026866 0.180±0.00 1.631±0.11 3.374±0.82 1.575±0.00 2.352±1.07 0.426±0.00 1.066±0.00 1.681±0.95 2.113±0.00 0.604±0.18 2.555±1.42 1.697±0.67 8.402±3.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001M CIL_00001M_0002 CGP 3:41555734-41742514
CIL_0006YI CIL_0006YI_0003 CGP 3:41626717-41759389

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005814 ISS centriole
GO:0008022 IEA protein C-terminus binding
GO:0015630 IEA microtubule cytoskeleton
GO:0017080 IEA sodium channel regulator activity
GO:0030276 IEA clathrin binding
GO:0042384 ISS cilium assembly
GO:0045162 IEA clustering of voltage-gated sodium channels
GO:0070062 IEA extracellular vesicular exosome
GO:0071439 IEA clathrin complex
GO:0097539 IEA ciliary transition fiber

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281142 SCLT1-001 protein_coding Homo_sapiens 0 2167
ENST00000281146 C4orf33-001 protein_coding Homo_sapiens 0.0000000000001 84
ENST00000439369 SCLT1-004 protein_coding Homo_sapiens 0 462
ENST00000502495 SCLT1-007 processed_transcript Homo_sapiens 0 1046
ENST00000503215 SCLT1-005 protein_coding Homo_sapiens 0 460
ENST00000503401 SCLT1-002 protein_coding Homo_sapiens 0.00003 55
ENST00000503565 SCLT1-009 processed_transcript Homo_sapiens 0 322
ENST00000506233 SCLT1-006 retained_intron Homo_sapiens 0 1458

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