C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059900 Tmem40 10090 - 6:115729131-115762466 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072933 Tmem40-201 115729141-115758999 protein_coding
  ENSMUST00000112946 Tmem40-001 115729131-115759271 protein_coding
  ENSMUST00000127728 Tmem40-002 115729143-115734951 protein_coding
  ENSMUST00000151849 Tmem40-003 115729533-115735293 retained_intron
  ENSMUST00000164303 Tmem40-202 115729141-115734951 protein_coding
  ENSMUST00000166254 Tmem40-203 115729141-115762466 protein_coding
  ENSMUST00000170625 Tmem40-204 115729141-115762466 protein_coding
  ENSMUST00000178558 Tmem40-205 115729141-115735103 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072933ENSMUST00000112946ENSMUST00000127728ENSMUST00000151849ENSMUST00000164303ENSMUST00000166254ENSMUST00000170625ENSMUST00000178558
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072933 0.391±0.30 N/A 6.833±1.39 0.159±0.02 0.975±0.46 N/A 0.065±0.00 0.213±0.08 5.398±1.40 1.184±1.04 0.175±0.02 0.410±0.20 2.975±2.90 0.173±0.17
ENSMUST00000112946 N/A N/A 3.420±1.16 0.097±0.00 0.919±0.30 N/A 0.087±0.04 N/A N/A 0.389±0.30 N/A 0.325±0.12 1.683±1.11 0.077±0.00
ENSMUST00000127728 0.393±0.04 0.035±0.00 5.658±2.86 0.222±0.00 4.712±1.92 1.557±0.40 0.181±0.20 0.211±0.06 6.038±3.61 4.530±3.56 0.270±0.28 1.410±0.70 2.592±1.10 0.246±0.14
ENSMUST00000151849 N/A 0.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.575±0.42 N/A N/A
ENSMUST00000164303 N/A 0.031±0.00 2.478±0.00 0.198±0.00 N/A 0.126±0.00 0.038±0.01 0.038±0.01 5.768±3.00 N/A 0.096±0.05 N/A 1.646±0.53 N/A
ENSMUST00000166254 N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A 0.205±0.00 0.270±0.06 N/A N/A
ENSMUST00000170625 N/A N/A N/A 0.181±0.06 0.270±0.00 N/A N/A N/A N/A N/A 0.226±0.12 0.309±0.00 0.365±0.00 N/A
ENSMUST00000178558 N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A 0.242±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SC CIL_0005SC_0002 CGP 6:115618067-115762466
CIL_0005SD CIL_0005SD_0002 CGP 6:115729131-115804893

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000088726 TMEM40 transmembrane protein 40 protein_coding Homo_sapiens

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