C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005SD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088726-ENSG00000144712 CGP 9606 3:12733525-12871916
GeneTranscriptPositionBiotype
ENSG00000088726 (TMEM40)
transmembrane protein 40 		ENST00000264728 (TMEM40-004) 12734707-12769457 protein_coding
ENST00000314124 (TMEM40-001) 12733525-12759539 protein_coding
ENST00000428020 (TMEM40-006) 12734637-12742517 protein_coding
ENST00000435218 (TMEM40-003) 12733916-12759259 protein_coding
ENST00000435575 (TMEM40-002) 12733558-12759277 protein_coding
ENST00000476331 (TMEM40-007) 12734637-12741356 processed_transcript
ENST00000480698 (TMEM40-005) 12734659-12737868 retained_intron
ENST00000485124 (TMEM40-008) 12737518-12739209 retained_intron
ENSG00000144713 (RPL32)
ribosomal protein L32 		ENST00000273223 (RPL32-002) 12836047-12841546 protein_coding
ENST00000396953 (RPL32-003) 12836060-12841529 protein_coding
ENST00000396957 (RPL32-201) 12834946-12841582 protein_coding
ENST00000429711 (RPL32-001) 12834485-12841588 protein_coding
ENST00000434963 (RPL32-006) 12839441-12840882 protein_coding
ENST00000435983 (RPL32-004) 12836050-12841545 protein_coding
ENST00000452606 (RPL32-007) 12839051-12841543 retained_intron
ENST00000457131 (RPL32-005) 12836102-12841544 protein_coding
ENSG00000207496 (SNORA7A)
small nucleolar RNA, H/ACA box 7A 		ENST00000384765 (SNORA7A-201) 12840312-12840450 snoRNA
ENSG00000213943 (KRT18P17)
keratin 18 pseudogene 17 		ENST00000396959 (KRT18P17-001) 12787393-12788671 processed_pseudogene
ENSG00000272263 (RP11-767C1.2)
 ENST00000606447 (RP11-767C1.2-001) 12832219-12832728 antisense
CIL_0005SD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059900-ENSMUSG00000030319 CGP 10090 6:115729131-115804893
GeneTranscriptPositionBiotype
ENSMUSG00000030319 (Cand2)
cullin-associated and neddylation-dissociated 2 (putative) 		ENSMUST00000075995 (Cand2-001) 115774538-115804893 protein_coding
ENSMUSG00000059900 (Tmem40)
transmembrane protein 40 		ENSMUST00000072933 (Tmem40-201) 115729141-115758999 protein_coding
ENSMUST00000112946 (Tmem40-001) 115729131-115759271 protein_coding
ENSMUST00000127728 (Tmem40-002) 115729143-115734951 protein_coding
ENSMUST00000151849 (Tmem40-003) 115729533-115735293 retained_intron
ENSMUST00000164303 (Tmem40-202) 115729141-115734951 protein_coding
ENSMUST00000166254 (Tmem40-203) 115729141-115762466 protein_coding
ENSMUST00000170625 (Tmem40-204) 115729141-115762466 protein_coding
ENSMUST00000178558 (Tmem40-205) 115729141-115735103 protein_coding
ENSMUSG00000098477 (Gm27853)
predicted gene, 27853 		ENSMUST00000184176 (Gm27853-201) 115750366-115750615 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SD_0001ENSG00000088726ENST00000264728ENST00000314124ENST00000428020ENST00000435218ENST00000435575ENST00000476331ENST00000480698ENST00000485124ENSG00000144713ENST00000273223ENST00000396953ENST00000396957ENST00000429711ENST00000434963ENST00000435983ENST00000452606ENST00000457131ENSG00000207496ENST00000384765ENSG00000213943ENST00000396959ENSG00000272263ENST00000606447CIL_0005SD_0002ENSMUSG00000030319ENSMUST00000075995ENSMUSG00000059900ENSMUST00000072933ENSMUST00000112946ENSMUST00000127728ENSMUST00000151849ENSMUST00000164303ENSMUST00000166254ENSMUST00000170625ENSMUST00000178558ENSMUSG00000098477ENSMUST00000184176
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SD_0001ENSG00000088726ENST00000264728ENST00000314124ENST00000428020ENST00000435218ENST00000435575ENST00000476331ENST00000485124ENSG00000144713ENST00000273223ENST00000435983ENST00000457131ENSG00000207496ENST00000384765ENSG00000213943ENST00000396959ENSG00000272263ENST00000606447CIL_0005SD_0002ENSMUSG00000030319ENSMUST00000075995ENSMUSG00000059900ENSMUST00000072933ENSMUST00000112946ENSMUST00000127728ENSMUST00000151849ENSMUST00000164303ENSMUST00000166254ENSMUST00000170625ENSMUST00000178558ENSMUSG00000098477ENSMUST00000184176
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088726 ENST00000264728 0.139±0.00 N/A N/A N/A N/A N/A 0.562±0.00 0.259±0.00 0.054±0.00 0.966±0.00 0.087±0.00 1.167±0.37 12.438±0.00 0.132±0.01
ENST00000314124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.235±0.00 N/A N/A
ENST00000428020 N/A N/A N/A N/A N/A N/A N/A N/A 1.880±0.00 N/A N/A 6.886±5.65 25.752±3.34 0.510±0.00
ENST00000435218 N/A 0.169±0.00 N/A 0.066±0.00 N/A 0.034±0.00 0.163±0.00 0.110±0.08 0.242±0.20 0.822±0.51 0.044±0.00 0.675±0.66 5.390±0.65 0.112±0.04
ENST00000435575 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.427±0.00 N/A 0.108±0.00 2.702±0.69 0.117±0.00
ENST00000476331 N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000480698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485124 0.271±0.00 0.543±0.00 N/A 0.144±0.00 N/A 0.154±0.00 N/A 0.204±0.13 0.130±0.00 N/A N/A 0.241±0.00 N/A 0.177±0.00
ENSG00000144713 ENST00000273223 103.932±0.00 191.987±0.00 38.756±0.00 100.916±0.00 132.560±33.56 158.118±18.18 99.092±36.16 88.477±23.85 168.660±39.19 370.444±237.36 474.256±299.28 230.664±59.32 230.048±22.10 132.794±23.80
ENST00000396953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435983 526.267±0.00 743.825±0.00 22.375±0.00 214.129±98.96 343.559±195.88 362.654±247.09 101.726±47.72 196.694±87.43 165.577±4.74 289.636±205.20 328.597±206.99 871.190±635.72 1108.072±244.66 507.302±0.00
ENST00000452606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 412.209±59.72 339.728±75.18 262.280±0.00
ENSG00000207496 ENST00000384765 N/A N/A 1714.190±0.00 1373.680±0.00 8055.150±0.00 3307.820±0.00 2671.020±0.00 2154.690±0.00 7740.890±0.00 4075.130±0.00 3124.460±0.00 8011.800±0.00 N/A N/A
ENSG00000213943 ENST00000396959 N/A N/A N/A 0.021±0.00 0.023±0.00 N/A N/A N/A 0.061±0.00 0.123±0.11 0.128±0.00 N/A 0.043±0.00 0.307±0.20
ENSG00000272263 ENST00000606447 0.025±0.00 0.303±0.00 N/A 0.535±0.02 0.123±0.00 0.137±0.00 0.742±0.58 0.597±0.00 N/A 0.246±0.00 0.225±0.00 0.547±0.34 0.218±0.00 0.444±0.23
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030319 ENSMUST00000075995 3.198±2.22 7.948±1.20 3.371±0.19 7.054±5.32 4.802±2.38 2.306±0.20 22.115±2.06 1.615±0.29 1.198±1.23 3.141±0.49 12.825±2.14 9.639±2.34 8.388±2.40 2.557±0.62
ENSMUSG00000059900 ENSMUST00000072933 0.391±0.30 N/A 6.833±1.39 0.159±0.02 0.975±0.46 N/A 0.065±0.00 0.213±0.08 5.398±1.40 1.184±1.04 0.175±0.02 0.410±0.20 2.975±2.90 0.173±0.17
ENSMUST00000112946 N/A N/A 3.420±1.16 0.097±0.00 0.919±0.30 N/A 0.087±0.04 N/A N/A 0.389±0.30 N/A 0.325±0.12 1.683±1.11 0.077±0.00
ENSMUST00000127728 0.393±0.04 0.035±0.00 5.658±2.86 0.222±0.00 4.712±1.92 1.557±0.40 0.181±0.20 0.211±0.06 6.038±3.61 4.530±3.56 0.270±0.28 1.410±0.70 2.592±1.10 0.246±0.14
ENSMUST00000151849 N/A 0.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.575±0.42 N/A N/A
ENSMUST00000164303 N/A 0.031±0.00 2.478±0.00 0.198±0.00 N/A 0.126±0.00 0.038±0.01 0.038±0.01 5.768±3.00 N/A 0.096±0.05 N/A 1.646±0.53 N/A
ENSMUST00000166254 N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A 0.205±0.00 0.270±0.06 N/A N/A
ENSMUST00000170625 N/A N/A N/A 0.181±0.06 0.270±0.00 N/A N/A N/A N/A N/A 0.226±0.12 0.309±0.00 0.365±0.00 N/A
ENSMUST00000178558 N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A 0.242±0.00 N/A N/A N/A N/A
ENSMUSG00000098477 ENSMUST00000184176 N/A N/A N/A N/A N/A N/A N/A N/A 0.210±0.00 N/A N/A N/A 0.779±0.44 N/A

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