C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127728 Tmem40-002 ENSMUSG00000059900 10090 - 6:115729143-115734951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127728
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127728 0.393±0.04 0.035±0.00 5.658±2.86 0.222±0.00 4.712±1.92 1.557±0.40 0.181±0.20 0.211±0.06 6.038±3.61 4.530±3.56 0.270±0.28 1.410±0.70 2.592±1.10 0.246±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SC CIL_0005SC_0002 CGP 6:115618067-115762466
CIL_0005SD CIL_0005SD_0002 CGP 6:115729131-115804893

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264728 TMEM40-004 protein_coding Homo_sapiens 0 394
ENST00000314124 TMEM40-001 protein_coding Homo_sapiens 0 396
ENST00000435218 TMEM40-003 protein_coding Homo_sapiens 0 396
ENST00000435575 TMEM40-002 protein_coding Homo_sapiens 0 396
ENST00000476331 TMEM40-007 processed_transcript Homo_sapiens 0 394
ENST00000480698 TMEM40-005 retained_intron Homo_sapiens 0 353
ENST00000485124 TMEM40-008 retained_intron Homo_sapiens 4e-26 122

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