C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000088726 TMEM40 9606 - 3:12733525-12769457 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264728 TMEM40-004 12734707-12769457 protein_coding
  ENST00000314124 TMEM40-001 12733525-12759539 protein_coding
  ENST00000428020 TMEM40-006 12734637-12742517 protein_coding
  ENST00000435218 TMEM40-003 12733916-12759259 protein_coding
  ENST00000435575 TMEM40-002 12733558-12759277 protein_coding
  ENST00000476331 TMEM40-007 12734637-12741356 processed_transcript
  ENST00000480698 TMEM40-005 12734659-12737868 retained_intron
  ENST00000485124 TMEM40-008 12737518-12739209 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264728ENST00000314124ENST00000428020ENST00000435218ENST00000435575ENST00000476331ENST00000485124
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264728 0.139±0.00 N/A N/A N/A 0.562±0.00 0.259±0.00 0.054±0.00 0.966±0.00 0.087±0.00 1.167±0.37 12.438±0.00 0.132±0.01
ENST00000314124 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.235±0.00 N/A N/A
ENST00000428020 N/A N/A N/A N/A N/A N/A 1.880±0.00 N/A N/A 6.886±5.65 25.752±3.34 0.510±0.00
ENST00000435218 N/A 0.169±0.00 0.066±0.00 0.034±0.00 0.163±0.00 0.110±0.08 0.242±0.20 0.822±0.51 0.044±0.00 0.675±0.66 5.390±0.65 0.112±0.04
ENST00000435575 N/A N/A N/A N/A N/A N/A N/A 0.427±0.00 N/A 0.108±0.00 2.702±0.69 0.117±0.00
ENST00000476331 N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000485124 0.271±0.00 0.543±0.00 0.144±0.00 0.154±0.00 N/A 0.204±0.13 0.130±0.00 N/A N/A 0.241±0.00 N/A 0.177±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SC CIL_0005SC_0001 CGP 3:12583601-12769457
CIL_0005SD CIL_0005SD_0001 CGP 3:12733525-12871916

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000059900 Tmem40 transmembrane protein 40 protein_coding Mus_musculus

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