C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005SC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132155-ENSG00000088726 CGP 9606 3:12583601-12769457
GeneTranscriptPositionBiotype
ENSG00000075975 (MKRN2)
makorin ring finger protein 2 		ENST00000170447 (MKRN2-001) 12557014-12583713 protein_coding
ENST00000411987 (MKRN2-002) 12557087-12582503 protein_coding
ENST00000448482 (MKRN2-003) 12557090-12582626 protein_coding
ENSG00000088726 (TMEM40)
transmembrane protein 40 		ENST00000264728 (TMEM40-004) 12734707-12769457 protein_coding
ENST00000314124 (TMEM40-001) 12733525-12759539 protein_coding
ENST00000428020 (TMEM40-006) 12734637-12742517 protein_coding
ENST00000435218 (TMEM40-003) 12733916-12759259 protein_coding
ENST00000435575 (TMEM40-002) 12733558-12759277 protein_coding
ENST00000476331 (TMEM40-007) 12734637-12741356 processed_transcript
ENST00000480698 (TMEM40-005) 12734659-12737868 retained_intron
ENST00000485124 (TMEM40-008) 12737518-12739209 retained_intron
ENSG00000132155 (RAF1)
Raf-1 proto-oncogene, serine/threonine kinase 		ENST00000251849 (RAF1-001) 12583601-12664226 protein_coding
ENST00000416093 (RAF1-010) 12604135-12664125 nonsense_mediated_decay
ENST00000423275 (RAF1-006) 12584333-12664125 nonsense_mediated_decay
ENST00000432427 (RAF1-008) 12584267-12612005 protein_coding
ENST00000442415 (RAF1-007) 12583798-12664148 protein_coding
ENST00000460610 (RAF1-005) 12590641-12599755 retained_intron
ENST00000465826 (RAF1-004) 12586847-12604213 retained_intron
ENST00000471449 (RAF1-009) 12584346-12585905 retained_intron
ENST00000475353 (RAF1-012) 12587577-12592068 retained_intron
ENST00000491290 (RAF1-011) 12600199-12608867 retained_intron
ENST00000492690 (RAF1-003) 12608446-12612001 retained_intron
ENST00000494557 (RAF1-002) 12587979-12591916 retained_intron
CIL_0005SC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000441-ENSMUSG00000059900 CGP 10090 6:115618067-115762466
GeneTranscriptPositionBiotype
ENSMUSG00000000439 (Mkrn2)
makorin, ring finger protein, 2 		ENSMUST00000000449 (Mkrn2-201) 115601938-115618670 protein_coding
ENSMUSG00000000441 (Raf1)
v-raf-leukemia viral oncogene 1 		ENSMUST00000000451 (Raf1-001) 115618569-115676635 protein_coding
ENSMUST00000112949 (Raf1-003) 115618569-115675964 protein_coding
ENSMUST00000124553 (Raf1-005) 115622874-115630726 processed_transcript
ENSMUST00000127503 (Raf1-002) 115630198-115676635 retained_intron
ENSMUST00000130528 (Raf1-006) 115618067-115634621 retained_intron
ENSMUST00000147979 (Raf1-004) 115626284-115632995 protein_coding
ENSMUSG00000059900 (Tmem40)
transmembrane protein 40 		ENSMUST00000072933 (Tmem40-201) 115729141-115758999 protein_coding
ENSMUST00000112946 (Tmem40-001) 115729131-115759271 protein_coding
ENSMUST00000127728 (Tmem40-002) 115729143-115734951 protein_coding
ENSMUST00000151849 (Tmem40-003) 115729533-115735293 retained_intron
ENSMUST00000164303 (Tmem40-202) 115729141-115734951 protein_coding
ENSMUST00000166254 (Tmem40-203) 115729141-115762466 protein_coding
ENSMUST00000170625 (Tmem40-204) 115729141-115762466 protein_coding
ENSMUST00000178558 (Tmem40-205) 115729141-115735103 protein_coding
ENSMUSG00000081805 (Gm14335)
predicted gene 14335 		ENSMUST00000119165 (Gm14335-001) 115638250-115639059 processed_pseudogene
ENSMUSG00000098477 (Gm27853)
predicted gene, 27853 		ENSMUST00000184176 (Gm27853-201) 115750366-115750615 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SC_0001ENSG00000075975ENST00000170447ENST00000411987ENST00000448482ENSG00000088726ENST00000264728ENST00000314124ENST00000428020ENST00000435218ENST00000435575ENST00000476331ENST00000480698ENST00000485124ENSG00000132155ENST00000251849ENST00000416093ENST00000423275ENST00000432427ENST00000442415ENST00000460610ENST00000465826ENST00000471449ENST00000475353ENST00000491290ENST00000492690ENST00000494557CIL_0005SC_0002ENSMUSG00000000439ENSMUST00000000449ENSMUSG00000000441ENSMUST00000000451ENSMUST00000112949ENSMUST00000124553ENSMUST00000127503ENSMUST00000130528ENSMUST00000147979ENSMUSG00000059900ENSMUST00000072933ENSMUST00000112946ENSMUST00000127728ENSMUST00000151849ENSMUST00000164303ENSMUST00000166254ENSMUST00000170625ENSMUST00000178558ENSMUSG00000081805ENSMUST00000119165ENSMUSG00000098477ENSMUST00000184176
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SC_0001ENSG00000075975ENST00000170447ENST00000411987ENSG00000088726ENST00000264728ENST00000314124ENST00000428020ENST00000435218ENST00000435575ENST00000476331ENST00000485124ENSG00000132155ENST00000251849ENST00000423275ENST00000432427ENST00000442415CIL_0005SC_0002ENSMUSG00000000439ENSMUST00000000449ENSMUSG00000000441ENSMUST00000000451ENSMUST00000112949ENSMUST00000130528ENSMUSG00000059900ENSMUST00000072933ENSMUST00000112946ENSMUST00000127728ENSMUST00000151849ENSMUST00000164303ENSMUST00000166254ENSMUST00000170625ENSMUST00000178558ENSMUSG00000081805ENSMUST00000119165ENSMUSG00000098477ENSMUST00000184176
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000075975 ENST00000170447 7.601±0.00 11.523±0.00 2.495±0.00 6.007±3.57 4.483±0.00 6.963±0.00 5.008±2.81 4.431±2.98 3.581±0.04 5.627±1.05 6.097±0.00 9.313±2.71 7.244±1.91 13.500±1.51
ENST00000411987 N/A N/A N/A N/A N/A 6.838±0.00 N/A 3.123±0.00 N/A 6.803±0.00 N/A 4.543±0.00 N/A 28.237±3.14
ENST00000448482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000088726 ENST00000264728 0.139±0.00 N/A N/A N/A N/A N/A 0.562±0.00 0.259±0.00 0.054±0.00 0.966±0.00 0.087±0.00 1.167±0.37 12.438±0.00 0.132±0.01
ENST00000314124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.235±0.00 N/A N/A
ENST00000428020 N/A N/A N/A N/A N/A N/A N/A N/A 1.880±0.00 N/A N/A 6.886±5.65 25.752±3.34 0.510±0.00
ENST00000435218 N/A 0.169±0.00 N/A 0.066±0.00 N/A 0.034±0.00 0.163±0.00 0.110±0.08 0.242±0.20 0.822±0.51 0.044±0.00 0.675±0.66 5.390±0.65 0.112±0.04
ENST00000435575 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.427±0.00 N/A 0.108±0.00 2.702±0.69 0.117±0.00
ENST00000476331 N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000480698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485124 0.271±0.00 0.543±0.00 N/A 0.144±0.00 N/A 0.154±0.00 N/A 0.204±0.13 0.130±0.00 N/A N/A 0.241±0.00 N/A 0.177±0.00
ENSG00000132155 ENST00000251849 15.085±0.00 N/A 3.836±0.00 5.098±0.00 9.350±2.50 6.234±0.00 19.543±17.84 9.550±7.47 7.612±2.57 10.466±4.08 31.238±15.89 15.878±11.92 13.583±5.51 13.454±3.51
ENST00000416093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423275 N/A N/A N/A N/A N/A N/A 3.124±0.00 N/A 2.806±0.00 N/A N/A N/A N/A N/A
ENST00000432427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.241±0.00 8.225±0.00 N/A
ENST00000442415 N/A 18.957±0.00 N/A 7.590±0.00 7.975±0.00 12.659±0.00 10.306±0.00 7.167±0.00 7.725±0.00 6.048±0.00 21.785±0.00 2.702±0.00 8.283±0.00 N/A
ENST00000460610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000439 ENSMUST00000000449 21.667±2.50 47.963±1.31 11.013±1.02 N/A 24.843±3.01 18.914±2.35 20.189±1.01 14.043±2.02 11.962±3.14 21.041±2.63 17.766±1.21 24.986±9.71 9.738±0.96 26.086±9.36
ENSMUSG00000000441 ENSMUST00000000451 51.875±8.75 44.357±2.59 33.920±4.36 42.894±23.00 45.589±5.66 46.426±4.80 46.035±9.12 35.629±2.98 33.501±3.04 45.839±1.52 42.481±2.73 52.506±11.23 34.951±10.40 16.947±0.78
ENSMUST00000112949 15.432±0.16 N/A N/A N/A 14.570±0.00 N/A N/A N/A N/A N/A N/A 10.176±0.43 N/A N/A
ENSMUST00000124553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130528 N/A N/A 6.532±0.65 12.884±0.39 9.634±0.00 N/A N/A N/A 6.276±0.83 N/A 5.624±0.25 7.558±1.51 6.624±0.71 4.934±0.07
ENSMUST00000147979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000059900 ENSMUST00000072933 0.391±0.30 N/A 6.833±1.39 0.159±0.02 0.975±0.46 N/A 0.065±0.00 0.213±0.08 5.398±1.40 1.184±1.04 0.175±0.02 0.410±0.20 2.975±2.90 0.173±0.17
ENSMUST00000112946 N/A N/A 3.420±1.16 0.097±0.00 0.919±0.30 N/A 0.087±0.04 N/A N/A 0.389±0.30 N/A 0.325±0.12 1.683±1.11 0.077±0.00
ENSMUST00000127728 0.393±0.04 0.035±0.00 5.658±2.86 0.222±0.00 4.712±1.92 1.557±0.40 0.181±0.20 0.211±0.06 6.038±3.61 4.530±3.56 0.270±0.28 1.410±0.70 2.592±1.10 0.246±0.14
ENSMUST00000151849 N/A 0.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.575±0.42 N/A N/A
ENSMUST00000164303 N/A 0.031±0.00 2.478±0.00 0.198±0.00 N/A 0.126±0.00 0.038±0.01 0.038±0.01 5.768±3.00 N/A 0.096±0.05 N/A 1.646±0.53 N/A
ENSMUST00000166254 N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A 0.205±0.00 0.270±0.06 N/A N/A
ENSMUST00000170625 N/A N/A N/A 0.181±0.06 0.270±0.00 N/A N/A N/A N/A N/A 0.226±0.12 0.309±0.00 0.365±0.00 N/A
ENSMUST00000178558 N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A 0.242±0.00 N/A N/A N/A N/A
ENSMUSG00000081805 ENSMUST00000119165 0.378±0.22 0.218±0.11 0.397±0.03 0.586±0.41 0.152±0.06 0.356±0.17 0.149±0.13 0.182±0.18 0.238±0.17 0.394±0.16 0.085±0.05 0.261±0.16 0.310±0.34 0.134±0.07
ENSMUSG00000098477 ENSMUST00000184176 N/A N/A N/A N/A N/A N/A N/A N/A 0.210±0.00 N/A N/A N/A 0.779±0.44 N/A

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