C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060036 Rpl3 10090 - 15:80077794-80091868 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000081650 Rpl3-001 80077796-80083353 protein_coding
  ENSMUST00000185306 Rpl3-003 80080896-80091868 protein_coding
  ENSMUST00000185928 Rpl3-005 80081983-80083337 retained_intron
  ENSMUST00000187578 Rpl3-002 80077795-80083353 retained_intron
  ENSMUST00000187832 Rpl3-006 80080417-80083333 nonsense_mediated_decay
  ENSMUST00000188025 Rpl3-007 80077794-80082583 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081650ENSMUST00000185306ENSMUST00000185928ENSMUST00000187578
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081650 253.682±112.93 99.735±13.57 532.379±33.72 280.723±24.20 241.286±21.82 266.586±16.79 71.879±5.35 218.130±21.60 319.458±243.07 203.548±10.97 26.381±6.97 451.027±145.18 371.085±194.89 43.744±6.42
ENSMUST00000185306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.349±0.00
ENSMUST00000185928 N/A 571.789±93.83 N/A N/A 142.993±0.00 282.752±55.43 N/A N/A 139.154±16.91 132.439±15.88 N/A 523.444±116.39 N/A N/A
ENSMUST00000187578 N/A N/A N/A N/A N/A N/A N/A N/A 58.052±5.09 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NT CIL_0003NT_0002 CGP 15:79995900-80091868
CIL_0000CB CIL_0000CB_0002 CGP 15:80077794-80119501

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071353 IDA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003599 rpl3 ribosomal protein L3 protein_coding Danio_rerio
ENSG00000100316 RPL3 ribosomal protein L3 protein_coding Homo_sapiens

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