C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000187578 Rpl3-002 ENSMUSG00000060036 10090 - 15:80077795-80083353 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSMUST00000187578
Transcript ID Liver
ENSMUST00000187578 58.052±5.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NT CIL_0003NT_0002 CGP 15:79995900-80091868
CIL_0000CB CIL_0000CB_0002 CGP 15:80077794-80119501

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011251 rpl3-001 protein_coding Danio_rerio 0 697
ENSDART00000138327 rpl3-003 protein_coding Danio_rerio 4e-34 150
ENST00000216146 RPL3-001 protein_coding Homo_sapiens 0 1088
ENST00000401609 RPL3-003 protein_coding Homo_sapiens 0 1088
ENST00000402527 RPL3-009 protein_coding Homo_sapiens 0 761
ENST00000413027 RPL3P2-001 processed_pseudogene Homo_sapiens 0 959
ENST00000414649 RPL3P2-001 processed_pseudogene Homo_sapiens 0 953
ENST00000417615 RPL3P4-001 processed_pseudogene Homo_sapiens 0 540
ENST00000420536 RPL3-014 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000427905 RPL3-011 protein_coding Homo_sapiens 0 416
ENST00000428665 RPL3P2-001 processed_pseudogene Homo_sapiens 0 965
ENST00000434677 RPL3P2-001 processed_pseudogene Homo_sapiens 0 933
ENST00000436852 RPL3P12-001 processed_pseudogene Homo_sapiens 0 333
ENST00000437106 RPL3P1-001 processed_pseudogene Homo_sapiens 0 802
ENST00000445022 RPL3P2-001 processed_pseudogene Homo_sapiens 0 933
ENST00000449035 RPL3P2-001 processed_pseudogene Homo_sapiens 0 965
ENST00000453303 RPL3-012 protein_coding Homo_sapiens 0 584
ENST00000454216 RPL3P2-001 processed_pseudogene Homo_sapiens 0 933
ENST00000463217 RPL3P9-001 processed_pseudogene Homo_sapiens 0 902
ENST00000464182 RPL3-019 retained_intron Homo_sapiens 0 257
ENST00000465618 RPL3-002 processed_transcript Homo_sapiens 0 1327
ENST00000467105 RPL3-004 retained_intron Homo_sapiens 0 257
ENST00000467870 RPL3P3-001 processed_pseudogene Homo_sapiens 0 870
ENST00000473638 RPL3-018 retained_intron Homo_sapiens 0 279
ENST00000474162 RPL3P6-001 processed_pseudogene Homo_sapiens 0 752
ENST00000484358 RPL3-015 retained_intron Homo_sapiens 0 697

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