C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185306 Rpl3-003 ENSMUSG00000060036 10090 - 15:80080896-80091868 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000185306
Transcript ID Testis
ENSMUST00000185306 16.349±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NT CIL_0003NT_0002 CGP 15:79995900-80091868
CIL_0000CB CIL_0000CB_0002 CGP 15:80077794-80119501

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216146 RPL3-001 protein_coding Homo_sapiens 0 623
ENST00000401609 RPL3-003 protein_coding Homo_sapiens 0 625
ENST00000402527 RPL3-009 protein_coding Homo_sapiens 0 627
ENST00000413027 RPL3P2-001 processed_pseudogene Homo_sapiens 0 531
ENST00000414649 RPL3P2-001 processed_pseudogene Homo_sapiens 0 536
ENST00000420536 RPL3-014 nonsense_mediated_decay Homo_sapiens 3.00018e-42 176
ENST00000427905 RPL3-011 protein_coding Homo_sapiens 0 623
ENST00000428665 RPL3P2-001 processed_pseudogene Homo_sapiens 0 531
ENST00000434677 RPL3P2-001 processed_pseudogene Homo_sapiens 0 542
ENST00000436852 RPL3P12-001 processed_pseudogene Homo_sapiens 0 468
ENST00000445022 RPL3P2-001 processed_pseudogene Homo_sapiens 0 531
ENST00000449035 RPL3P2-001 processed_pseudogene Homo_sapiens 0 536
ENST00000453303 RPL3-012 protein_coding Homo_sapiens 0 621
ENST00000454216 RPL3P2-001 processed_pseudogene Homo_sapiens 0 531
ENST00000463217 RPL3P9-001 processed_pseudogene Homo_sapiens 0 505
ENST00000465618 RPL3-002 processed_transcript Homo_sapiens 8.00001e-42 176
ENST00000467870 RPL3P3-001 processed_pseudogene Homo_sapiens 0 556
ENST00000474162 RPL3P6-001 processed_pseudogene Homo_sapiens 0 529
ENST00000484358 RPL3-015 retained_intron Homo_sapiens 1.99965e-42 176

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